BAC Information

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BAC

Clone NameMSMg01-524L18
Chromosome6 (Build37)
Map Location 141,109,993 - 141,242,773
singlet/doubletdoublet
Overlap genePde3a
Upstream geneLOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868, LOC664875
Downstream geneSlco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524L18.T7 (MSMg01no524_l18.b1)MSMg01-524L18.TJ (MSMg01no524_l18.g1)
ACCAG594741AG594742
length760752
length of high quality
(start - end)		632 (28 - 659)650 (68 - 717)
definitionCHROMAT_FILE: MSMg01no524_l18.b1 PHD_FILE: MSMg01no524_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:05 2005CHROMAT_FILE: MSMg01no524_l18.g1 PHD_FILE: MSMg01no524_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,109,993 - 141,110,612)(141,242,124 - 141,242,773)
sequence
TTGGGCCGCTAAACGACTCCTATATGGAGAGGATCCGCGGAATTCAGATG
CTCGGGTCATCAGGCTTGGCCGCAAGTGCAGTTACCCACTGAGCCATCCT
ACTGGCAGAAGGCATTGAGCAGCAGTAGCAGCAGCAGCAAGAACAACAAC
AAATATAAAACATGTCATCCTATGCTAAATTTGAACTTTATGAAGGTTTG
CTCAGTCATTATTCTTGTTCATTTAAATTTGCTCTCTGGACACAATTATA
TAAAATAACTCGTCCAGTGTTTAATCCACAAGGAATCATTTTTCCCAGCT
GACAGCACTCTGGGAAAAAGTTAAGCAGACCATGGGGCCTGTGCAGCTGA
GGATCATCAAAGCTCAGCACAGGGCGGAAATGCAGGATGTAAAAGCCATC
TGGCCAGACATCATCAGCAAATTTTCACAAGGAGATCTAGCTTTTGTTAC
AGTGCAGAACAGAATTGTTTACACCCTCTTCATAAAATAAGTGATTCAAG
GTTTAGGGGTGGGGTGTATCCCAGCAGGGCTGTCTTCAGACACCAAGAAC
GGGAGGACTTTCCATTCTCAAACATCTGTAGTTAAGACTAAGACTGTGGG
GTAGGACACCTGACTCATAGCTCCCCCAGTCAGACTACACAGGAGTGTAC
AGCTGTGGGAGGACAATGACTGCTGCACTCAGGCCATAGCTAGCTTCTCT
GTGATGGGTTAAAGCTCTGTGTGCTCACTAGTTATCTATCCTTTCCTGTT
GATATCACAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCATTACAGACTATAGACTTTCCACAAATTTA
TTTCTTTATCTAAGAAAGAAGAGCCCACAGTTCTCACCATCTTCCACTTT
ATTTAGGCTAAAAATCTGAAAACTTTATTACCTCCTGCCTTCCCATCAGA
TCTTGAAGTCTAATAATCTTTATAGAATATGATTCTTCTCTTCTATGATT
TTGTTTTATTTTTAAAATTATTCCAAATGTCATTATAAAAATGTTACCAA
AAAAAAATCACATGCCTAAAGTAACCAGGCCGAACGACTATACAGTTTAG
TCTATGTTTAGTACTAAATTTCCCTGCATTTAGAGTAACCATTTGACATG
GAAGCTGGGAAGCAGCACAATGGATTTTATACTTTCATTATCAGATATAT
TTTATACATTTATCTACATGGTTGAGTTATAACTAGAAGAGCAGTTAGCT
TTATACCCTCTCTCATAGTGCATGTCCATTGCCTGCATTCACACAGAACA
TGGTTCTTAATCATATGCTTAGCTCTCTAAAATACTTCCATTTTCTCCCA
AGCTATCTCTTGGGTCAAAGGTGCTATTCTGTGGCACTCAGGCTGCTGGT
CTACTGCACTTACTGATTAAGCCATTATTTATTCTTCCTTGAACACTCAA
AGAGCTATTAAATAGCTCCTGGGGACAACAGGACAATAAAAAGAAGCCAC
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_l18.b1 MSMg01no524_l18.b1 CHROMAT_FILE:
MSMg01no524_l18.b1 PHD_FILE: MSMg01no524_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:05 2005
         (632 letters)



>mm_chr6_141109781_141110812
          Length = 1032

 Score = 1199 bits (620), Expect = 0.0
 Identities = 620/620 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaattcagatgctcgggtcatcaggcttggccgcaagtgcagttacccactgagccatcc 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcagatgctcgggtcatcaggcttggccgcaagtgcagttacccactgagccatcc 272

                                                                       
Query: 73  tactggcagaaggcattgagcagcagtagcagcagcagcaagaacaacaacaaatataaa 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tactggcagaaggcattgagcagcagtagcagcagcagcaagaacaacaacaaatataaa 332

                                                                       
Query: 133 acatgtcatcctatgctaaatttgaactttatgaaggtttgctcagtcattattcttgtt 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acatgtcatcctatgctaaatttgaactttatgaaggtttgctcagtcattattcttgtt 392

                                                                       
Query: 193 catttaaatttgctctctggacacaattatataaaataactcgtccagtgtttaatccac 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 catttaaatttgctctctggacacaattatataaaataactcgtccagtgtttaatccac 452

                                                                       
Query: 253 aaggaatcatttttcccagctgacagcactctgggaaaaagttaagcagaccatggggcc 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaggaatcatttttcccagctgacagcactctgggaaaaagttaagcagaccatggggcc 512

                                                                       
Query: 313 tgtgcagctgaggatcatcaaagctcagcacagggcggaaatgcaggatgtaaaagccat 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgtgcagctgaggatcatcaaagctcagcacagggcggaaatgcaggatgtaaaagccat 572

                                                                       
Query: 373 ctggccagacatcatcagcaaattttcacaaggagatctagcttttgttacagtgcagaa 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctggccagacatcatcagcaaattttcacaaggagatctagcttttgttacagtgcagaa 632

                                                                       
Query: 433 cagaattgtttacaccctcttcataaaataagtgattcaaggtttaggggtggggtgtat 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cagaattgtttacaccctcttcataaaataagtgattcaaggtttaggggtggggtgtat 692

                                                                       
Query: 493 cccagcagggctgtcttcagacaccaagaacgggaggactttccattctcaaacatctgt 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cccagcagggctgtcttcagacaccaagaacgggaggactttccattctcaaacatctgt 752

                                                                       
Query: 553 agttaagactaagactgtggggtaggacacctgactcatagctcccccagtcagactaca 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 agttaagactaagactgtggggtaggacacctgactcatagctcccccagtcagactaca 812

                               
Query: 613 caggagtgtacagctgtggg 632
           ||||||||||||||||||||
Sbjct: 813 caggagtgtacagctgtggg 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_l18.g1 MSMg01no524_l18.g1 CHROMAT_FILE:
MSMg01no524_l18.g1 PHD_FILE: MSMg01no524_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:06 2005
         (650 letters)



>mm_chr6_141241924_141242973
          Length = 1050

 Score = 1257 bits (650), Expect = 0.0
 Identities = 650/650 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accattacagactatagactttccacaaatttatttctttatctaagaaagaagagccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 accattacagactatagactttccacaaatttatttctttatctaagaaagaagagccca 791

                                                                       
Query: 61  cagttctcaccatcttccactttatttaggctaaaaatctgaaaactttattacctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 cagttctcaccatcttccactttatttaggctaaaaatctgaaaactttattacctcctg 731

                                                                       
Query: 121 ccttcccatcagatcttgaagtctaataatctttatagaatatgattcttctcttctatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ccttcccatcagatcttgaagtctaataatctttatagaatatgattcttctcttctatg 671

                                                                       
Query: 181 attttgttttatttttaaaattattccaaatgtcattataaaaatgttaccaaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 attttgttttatttttaaaattattccaaatgtcattataaaaatgttaccaaaaaaaaa 611

                                                                       
Query: 241 tcacatgcctaaagtaaccaggccgaacgactatacagtttagtctatgtttagtactaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tcacatgcctaaagtaaccaggccgaacgactatacagtttagtctatgtttagtactaa 551

                                                                       
Query: 301 atttccctgcatttagagtaaccatttgacatggaagctgggaagcagcacaatggattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atttccctgcatttagagtaaccatttgacatggaagctgggaagcagcacaatggattt 491

                                                                       
Query: 361 tatactttcattatcagatatattttatacatttatctacatggttgagttataactaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tatactttcattatcagatatattttatacatttatctacatggttgagttataactaga 431

                                                                       
Query: 421 agagcagttagctttataccctctctcatagtgcatgtccattgcctgcattcacacaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agagcagttagctttataccctctctcatagtgcatgtccattgcctgcattcacacaga 371

                                                                       
Query: 481 acatggttcttaatcatatgcttagctctctaaaatacttccattttctcccaagctatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acatggttcttaatcatatgcttagctctctaaaatacttccattttctcccaagctatc 311

                                                                       
Query: 541 tcttgggtcaaaggtgctattctgtggcactcaggctgctggtctactgcacttactgat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcttgggtcaaaggtgctattctgtggcactcaggctgctggtctactgcacttactgat 251

                                                             
Query: 601 taagccattatttattcttccttgaacactcaaagagctattaaatagct 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taagccattatttattcttccttgaacactcaaagagctattaaatagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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