BAC Information

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BAC

Clone NameMSMg01-526H03
Chromosome6 (Build37)
Map Location 18,093,858 - 18,094,119
singlet/doubletsinglet
Overlap genenone
Upstream geneEG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2, Asz1
Downstream geneLOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526H03.T7 (MSMg01no526_h03.b1)MSMg01-526H03.TJ (MSMg01no526_h03.g1)
ACCAG596038AG596039
length702628
length of high quality
(start - end)
405 (40 - 444)263 (71 - 333)
definitionCHROMAT_FILE: MSMg01no526_h03.b1 PHD_FILE: MSMg01no526_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:22 2005CHROMAT_FILE: MSMg01no526_h03.g1 PHD_FILE: MSMg01no526_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TGAATTTCTTAGACAAAAGATGGATTTGGAAGGTATCATTGTAAGTGAGG
TAACCCAATCACAAAAGAACACACATGATATGCACTCACTCTTAAGTGGA
TATTAGACCAGAATATCAGAATACCCAAGACACAATTTGCAATACACATG
AAATGCAACAAGAAGGAAGACCAAAGTGTGGATATTTTATTTCTTCGTAG
AATGGGGAACAAAATATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAG
CAGAAACTGAAGGACGGACCATCAAGAAATTTCCCCACCTGGGGATCTAT
CCCATAAACAACCACCAAACCCAAAAAGTAGCAGATGCCAACAAAAGCTT
GCTGACAGGAGCCTGATATAGCTGTCTACTGAGAGGCTCTGCCAGTGCCT
GACAAATACAGAAGTGGATATTCACAGTCATCTATTAGAGGAAGCTCAAG
GTCCCCAATGAAGGAGCTAGAGAAAATAACCCTTGGAGCTGAGGGGGTTT
GCAAGCTCCCTTAGGAGGAACAACCATTTGGACTAACCCGGTCCCCCCGA
AATTCTCCTGGGACTAAACCCCCCATTCAAAGAAAACCCCCCGGAGGGGA
ACCCTGGGGCTCTTAACGGGCCAATTGTAACCCGGGGGAAGGGCCCAAAC
CC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTTGGCATGGCTGGGATTATGTTGCTGA
TTTCACAAATAATTAACAGGATTTTTTTTGTAGAAACAAAGACTTGTTGA
CGATACAGCACATCCAGTAAAATGGAAAGTGCTAATCAGTTTGGGGAGCA
TTCACCCAGACATACTTCTGTGTATGCAAACTGTCCTCTTGCCATTTGAC
CTAGGGCTTTATAAAACTACCCTTATCTCTTTCCATAACTTTGTCTTTTT
TCTTTTTAAAAAAACCTTTATTTACATTTCAAATGTTATCCCTGTTCCTG
GTTTCTCCTCAGAAAACCCNTCTCCCCATAACCTACCCCTCCTCCTGGNT
CAGCACCCGCCCACTTCTGCTTCCTAGCCATGGCATTCCCCTACACTGGG
GCATAACAGCTTCACAGACCATTTGATTTTCTTCTAAGCCAATCCTCTGC
TACTTATGCAGCTTGGACCCTTGAGTGCCACCATGGGGAACGGTTTGGGT
TGGGGGTTACTCCCTTGAAAGCTCTGGGGGGACCGGGTAAGTCCAAATTG
GTATTCCAAACAAAGAGCTGGGAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_h03.g1 MSMg01no526_h03.g1 CHROMAT_FILE:
MSMg01no526_h03.g1 PHD_FILE: MSMg01no526_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:22 2005
         (263 letters)



>mm_chr6_18093658_18094319
          Length = 662

 Score =  493 bits (255), Expect = e-144
 Identities = 261/263 (99%), Gaps = 1/263 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttggcatggctgggattatgttgctgatttcacaaataattaacaggattttttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 actttggcatggctgggattatgttgctgatttcacaaataattaacaggattttttttg 403

                                                                       
Query: 61  tagaaacaaagacttgttgacgatacagcacatccagtaaaatggaaagtgctaatcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tagaaacaaagacttgttgacgatacagcacatccagtaaaatggaaagtgctaatcagt 343

                                                                       
Query: 121 ttggggagcattcacccagacatacttctgtgtatgcaaactgtcctcttgccatttgac 180
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tt-ggtagcattcacccagacatacttctgtgtatgcaaactgtcctcttgccatttgac 284

                                                                       
Query: 181 ctagggctttataaaactacccttatctctttccataactttgtcttttttctttttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctagggctttataaaactacccttatctctttccataactttgtcttttttctttttaaa 224

                                  
Query: 241 aaaacctttatttacatttcaaa 263
           |||||||||||||||||||||||
Sbjct: 223 aaaacctttatttacatttcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 662
Length adjustment: 9
Effective length of query: 254
Effective length of database: 653
Effective search space:   165862
Effective search space used:   165862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)