BAC Information

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BAC

Clone NameMSMg01-526I15
Chromosome6 (Build37)
Map Location 37,590,516 - 37,590,905
singlet/doubletsinglet
Overlap genenone
Upstream genePtn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046
Downstream geneYbx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526I15.T7 (MSMg01no526_i15.b1)MSMg01-526I15.TJ (MSMg01no526_i15.g1)
ACCAG596108AG596109
length723719
length of high quality
(start - end)		613 (41 - 653)628 (69 - 696)
definitionCHROMAT_FILE: MSMg01no526_i15.b1 PHD_FILE: MSMg01no526_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:29 2005CHROMAT_FILE: MSMg01no526_i15.g1 PHD_FILE: MSMg01no526_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTATAATCTTACCACTAAGAAAAAAGAAATCATCTATTTGTCTGTATAGC
ACCACTACAAGACAGTACATCTTCATTGATCTGCAGAAATATGCTCAACA
GGATAGGCTAATACCTTGATTATTATATAATATTTAATAATAACAGGAAA
GGCATATCAAATGCAAGAAGCAATCCTGGGATGAAGTCTCTATGGGAATT
TGTCTCACAGAGCTCACCCATCATAAGCCATGCAAAAATGGTAGGTTACC
TCCAGGAAGGTTACCTGCCAACCTTAGCCTATCCTAGATGGCTCCTGACA
TTAATTCTTTGACTGGAGAGATGGCTCACTGGTTAGCCTCACTTGAGGCT
TCCAGAGGACCTGAATTCTGTTCAGGTAGCTCACAACTACCTGAGGCTCC
CATTCCCATAGACCCAATACATCCTTTCAGATTCTTCAGGTGTACATACA
CATGTATCATACACTCACACAGACATACACTCACATACATATAATAAAAG
TAAAGAAAAGAGTAAATGTTTAGTAGTTATCTGCAAGCTATTATATTTTA
ATTTGTAATGTGAGGGCTTTATCTTCCTGAGTTTATAGTCTAATTTTTTT
TTCACACCGACTTCAGAAAACATCGTGGATCAGTTTTTTGATGTGAGATT
GGGACCACCTATAGTCTGCTCTN

TTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAGAGAAAGAGAGTAGGGATGAGTGCTACAC
CTCTGAAAGGGAGTGGGGCCCTTTGTCAGTTAAGAAAAGTCATCTGGCCT
TGTCCCCTGCCATTTAAGTGAGGTTATATTTGCATAGATAAGGGCAGAAA
GCTCACTATCTTGTTAGATACTAGATTTTATAATGACCTTCCTGAGGCCA
TCTTGGTGGTTTAAATATGCTTGACCCATGGGAAGTGGCACTATTAGGAG
GTATGTGGCCTTACTGAAGTAGGTGTGGCCTTGTTGGAGGAAGTGTGTCA
CTTTGGGGGTGGGCTTTGAGGTCCTATGCTTAAACTTTGCCCAGTGCAGA
AGAGACCCTCCTGGCTGCCTACAGAAGAGAATCTCCTTCTGGCTGCCTTT
GGATCAAGATGTAGAATTCTCAGCTCCTCCAGTACCATGTCTGCCTACAG
TTTGCCATGCTTCCTGCCATGATGATAATAGACTGAACCTCTGAAATTGT
AAGCCAGCCCCAATTAAATATTGTCCTTTATAAGAGTTGCCTTGGGGGCC
AAGCTTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAG
GTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAACTCCAGGA
CAGCCAGTGCTATACAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_i15.g1 MSMg01no526_i15.g1 CHROMAT_FILE:
MSMg01no526_i15.g1 PHD_FILE: MSMg01no526_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:29 2005
         (628 letters)



>mm_chr6_37590516_37591543
          Length = 1028

 Score =  685 bits (354), Expect = 0.0
 Identities = 381/390 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagagaaagagagtagggatgagtgctacacctctgaaagggagtggggccctttgtca 60
           |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct: 390 tcagagaaagagagtagggatgagtgctacacctctgagagggagtggagtcctttgtca 331

                                                                       
Query: 61  gttaagaaaagtcatctggccttgtcccctgccatttaagtgaggttatatttgcataga 120
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 330 gttaagaaaagtcatctggccttgtcccctgccatttatgcgaggttatatttgcataga 271

                                                                       
Query: 121 taagggcagaaagctcactatcttgttagatactagattttataatgaccttcctgaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 taagggcagaaagctcactatcttgttagatactagattttataatgaccttcctgaggc 211

                                                                       
Query: 181 catcttggtggtttaaatatgcttgacccatgggaagtggcactattaggaggtatgtgg 240
           |||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 210 catcgtggtggtttaaataggcttgacccatgggaagtggcactattaggaggtgtgtgg 151

                                                                       
Query: 241 ccttactgaagtaggtgtggccttgttggaggaagtgtgtcactttgggggtgggctttg 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ccttactaaagtaggtgtggccttgttggaggaagtgtgtcactttgggggtgggctttg 91

                                                                       
Query: 301 aggtcctatgcttaaactttgcccagtgcagaagagaccctcctggctgcctacagaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  aggtcctatgcttaaactttgcccagtgcagaagagaccctcctggctgcctacagaaga 31

                                         
Query: 361 gaatctccttctggctgcctttggatcaag 390
           ||||||||||||||||||||||||||||||
Sbjct: 30  gaatctccttctggctgcctttggatcaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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