BAC Information

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BAC

Clone NameMSMg01-526L05
Chromosome6 (Build37)
Map Location 19,482,872 - 19,483,556
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526L05.T7 (MSMg01no526_l05.b1)MSMg01-526L05.TJ (MSMg01no526_l05.g1)
ACCAG596230AG596231
length747601
length of high quality
(start - end)		665 (35 - 699)138 (68 - 205)
definitionCHROMAT_FILE: MSMg01no526_l05.b1 PHD_FILE: MSMg01no526_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:42 2005CHROMAT_FILE: MSMg01no526_l05.g1 PHD_FILE: MSMg01no526_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAGG
AAATAAATGGCTAATTAAGAAACATTGTATTTATTGAAGTTCCTCCTCTG
TTTTCACTTATCTTTGTGGGCATTATGGACAGAATGCTGACCCTGGTGTT
TCCAATAATTCCAGTATTGGAATTAGAGGTGTGTTCCTCTACACCCAGCT
CTAATAATAGTATTTATTTATTACTAAAATAACTATATATATATATATAT
ATACATATGTGTGTATATGTTTGTGTGTGTGTGAAAAATAAAAATTAAAT
TAGTGATCTGGCATGATAATTCATATTATTATATATTACCATAATCATAA
AGGTTAGTAAATACAAACAGTTTTTGATAAATTATATTATGGGAAAGATA
CAAAATTCACTGCGAAACTGATTCTCACAGAGAAATGTATAATTGAGCCT
TATGTCTTTATCTGGATAATTCCTGAGTTGAAAGAAAAGAGCCAAGGAAA
GAAAATGCTGGGCCTCCTCACTCAGCTCCATGTTGGGAGACTGGGCTTGT
GATCTGGGTACATGTCTCAAACTTCAGTACTTAATATAGGGATCTTTGTA
AGTACAGAAACAGGTCTCCTGGAGGGCCTAGGAGAATCTGATGTTAACAG
CTTTGTTTAGAGTAGCATACTCCTAGAGATTAACTGCTACGATAGAATTA
TAAAATAACCATATTTTGTTTCAGGTGAAATACATGGCTTGGAAATN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCAC
CTGAAAAATGTTCAACATCCTTAATCATGAGGGAAATGCAAATGAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAATT
CTGGGTGACAGCAAATGCTGGCAAGGAATGTGAAAAAAAAAAAACCCCCC
CCCCTTGGTGGGGGGGATTGTAAACTTTAAAAACCCCCCTGGGAAAACCC
CTCGGGGGGTTTCCCCCAAAAAATGGGGAAAAAATAACTCTCGGGGGGGA
TCCCCCGCAAAAACCCCTCTTTCTGGGGGGGGGATTATTTCCCCCCAAAA
AAAAATTTTTTCCCCCCCCCGGGGGGGAAAAAAAAAAAAAGTTCTCCTCT
CTGTTTTTTTCCCCCTCCTNCTGTGTTTTTTTTGTTTTTTGTTTTTTTTT
TTTTTAATACGTAAAGTCACCTCCACCCTTCCCCGCCATCGCGTTATTTC
TTTATTTTCTAATTTAACTAATTTCAATAACAGGACAGGGCATATCGCTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_l05.b1 MSMg01no526_l05.b1 CHROMAT_FILE:
MSMg01no526_l05.b1 PHD_FILE: MSMg01no526_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:42 2005
         (665 letters)



>mm_chr6_19482692_19483756
          Length = 1065

 Score = 1193 bits (617), Expect = 0.0
 Identities = 657/685 (95%), Gaps = 24/685 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaggaaataaatggctaattaagaaacattgtatttattgaagttcctcctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 gaattctttaggaaataaatggctaattaagaaacattgtatttattgacgttcctcctc 240

                                                                       
Query: 65  tgttttcacttatctttgtgggcattatggacagaatgctgaccctggtgtttccaataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgttttcacttatctttgtgggcattatggacagaatgctgaccctggtgtttccaataa 300

                                                                       
Query: 125 ttccagtattggaattagaggtgtgttcctctacacccagctctaataatagtatttatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttccagtattggaattagaggtgtgttcctctacacccagctctaataatagtatttatt 360

                                                                       
Query: 185 tattactaaaataactatatatatatatatatat----------acatatgtgtgt---- 230
           ||||||||||||||||||||||||||||||||||          | ||||||||||    
Sbjct: 361 tattactaaaataactatatatatatatatatatgtatatatatatatatgtgtgtgtgt 420

                                                                       
Query: 231 ----------atatgtttgtgtgtgtgtgaaaaataaaaattaaattagtgatctggcat 280
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtgtgtgtgtatatgtttgtgtgtgtgtgaaaaataaaaattaaattagtgatctggcat 480

                                                                       
Query: 281 gataattcatattattatatattaccataatcataaaggttagtaaatacaaacagtttt 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gataattcatattattatatattaccataatcataaaggttagtaaatacaaacagtttt 540

                                                                       
Query: 341 tgataaattatattatgggaaagatacaaaattcactgcgaaactgattctcacagagaa 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgataaattatattatgggaaagatacaaaattcactgcgaaactgattctcacagagaa 600

                                                                       
Query: 401 atgtataattgagccttatgtctttatctggataattcctgagttgaaagaaaagagcca 460
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 601 atgtataattgagccttatgtctttatctgggtaattcctgagttgaaagaaaagagcca 660

                                                                       
Query: 461 aggaaagaaaatgctgggcctcctcactcagctccatgttgggagactgggcttgtgatc 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aggaaagaaaatgctgggcctcctcactcagctccatgttgggagactgggcttgtgatc 720

                                                                       
Query: 521 tgggtacatgtctcaaacttcagtacttaatatagggatctttgtaagtacagaaacagg 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgggtacatgtctcaaacttcagtacttaatatagggatctttgtaagtacagaaacagg 780

                                                                       
Query: 581 tctcctggagggcctaggagaatctgatgttaacagctttgtttagagtagcatactcct 640
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tctcctggagggcctaggagaatctgatgttaacagctttgtttagagtagcatactcct 840

                                    
Query: 641 agagattaactgctacgatagaatt 665
           ||||||||||||||| |||||||||
Sbjct: 841 agagattaactgctatgatagaatt 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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