BAC Information

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BAC

Clone NameMSMg01-527E01
Chromosome6 (Build37)
Map Location 116,062,025 - 116,062,674
singlet/doubletsinglet
Overlap geneTmcc1
Upstream geneSyn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1
Downstream geneLOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527E01.T7 (MSMg01no527_e01.b1)MSMg01-527E01.TJ (MSMg01no527_e01.g1)
ACCAG596650AG596651
length1,045736
length of high quality
(start - end)		---650 (87 - 736)
definitionCHROMAT_FILE: MSMg01no527_e01.b1 PHD_FILE: MSMg01no527_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:26 2005CHROMAT_FILE: MSMg01no527_e01.g1 PHD_FILE: MSMg01no527_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCCTCCCATCTCCCCGTTCGCCATCTATTCCCGGCATGAGGGCATAC
CTCATTGGAGTGTGTACTATCAATTACATACGCCCCACCCCCACGTCCCC
ATGCTCGCCCCTACCTCTCCCACAATGCCACCTCCACACTCAGCTCTTTC
TTATTATTCAAGGGAGGACGTGGCGAGGACTGGTAAAAAGATACACATAG
TAGTTTACACTACCACACGCAAGCGCACATTTTTTTATTGTTTTGCATCC
GGAGTAGCTTTGCCTTGCTTGTGTTGTCCCCCCCCTCTTAACCCATTTAT
CTTCCGCGCTCGCCGGCTTGTTACGCACCACCAAAAAAAATCGAGATAGT
GATTTTCGCACCCGCAACTACTGGTTGGAATCTCCCCTCTCAGACCCTCC
CTTCTTATACTTTATTGCCGACCCCCCTTCCCGGCGGCCTGCGTATGCTG
CAACTGTCACCGCCCGCCCCCACCCCTCGCAACGGCTGACCCCCCGTCTC
ATACCACTTTTTTAATTTTTAATAAATATCTATAAATGTTTCTATATTTA
ACTCCTACATTTCTACCTTCTAAATTCTTATATCTCCCTTTGGTAATAAT
TTTGATACACTTTCGGGACGTTATCACTGATGTGTTGTCCGTACCCGCCT
ATTACACTAAATGCTGCGAGGCACGGAACAGATTGAACAGTGGAGCCGCG
ACGACACAACTTTCCGCCACATAGCGTAGCTCGCCGAGCTTACCCTCCTT
ATCGTTTAAATACTTCCTACCGTTGTTTTCGGTCTTTTTATTTCTAATAT
ATACCCATATCCAGCACGTGTTCACAAATATCCCACTACACCAGGTCGAG
CGCCGCGGTTACAGGAGCCAGATAATTTTTGTCACCTCCTTTCCTCCCTA
CCCGCCCCTATTCCGATCCTCCTTCTACTCCCCTTACGTCATCTTATTAT
AACTGGTGCTCTACCCCACACATCTTAATACTATCCATTTGTATACCCTG
CCACGACTCCTTTTATTATACTCTATACACTCTCTCCCCATATAT

CCAAANGCTCGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATCCGCCTGC
CTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACCAGGTCAA
GTTTTTATGTTGATCTCTACATGTTATTTAAGATACATTGAAACATTTGG
CTTTTTTTAAATTTAATTTTATTTGTAATTCATTTTTTACTTTCCATATT
TCATTCCCCATCCCTTCCCATCCCACACCTCCTCCCCATTCCACCCCAAC
TCCACGTGGATGCTTCCATCCCCCACCCCACCTGACCTCTAAACTCCCTG
GGGCCTCCAGTCTCTTGAGGGTTATTATTTATTTATTTTAAATAAAAGCA
ATGTTTGATGCTGGGCATGGTTGCACATGCCTTTAATCAAGATAAACTCA
TTCATAAACCAATTAGAATATTGTAGTAAGTTGATAAATTTCCATTGGGA
GCTTTTATTTTTTTTAAATCTGCAATTAATTTTTGAGTACTTAGCTGTTA
TAATCATTGTAATCCACATCCTTTATTATGAATTTGTGTACATATGTACT
TACAAAAACATAATTTTACTGTAGTCACAAATTTGTTGGTTTGGCTTTCT
AATCCAGCTTATACTGTATCTTCTCCAACCCTCCCATCCCCTGGTTCTTC
TCACGTAGATCAGGCTGTCCTAGACCTCTTTACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_e01.g1 MSMg01no527_e01.g1 CHROMAT_FILE:
MSMg01no527_e01.g1 PHD_FILE: MSMg01no527_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:26 2005
         (650 letters)



>mm_chr6_116061825_116062874
          Length = 1050

 Score = 1257 bits (650), Expect = 0.0
 Identities = 650/650 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccaccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccaccagg 260

                                                                       
Query: 61  tcaagtttttatgttgatctctacatgttatttaagatacattgaaacatttggcttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagtttttatgttgatctctacatgttatttaagatacattgaaacatttggcttttt 320

                                                                       
Query: 121 ttaaatttaattttatttgtaattcattttttactttccatatttcattccccatccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaatttaattttatttgtaattcattttttactttccatatttcattccccatccctt 380

                                                                       
Query: 181 cccatcccacacctcctccccattccaccccaactccacgtggatgcttccatcccccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatcccacacctcctccccattccaccccaactccacgtggatgcttccatcccccac 440

                                                                       
Query: 241 cccacctgacctctaaactccctggggcctccagtctcttgagggttattatttatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccacctgacctctaaactccctggggcctccagtctcttgagggttattatttatttat 500

                                                                       
Query: 301 tttaaataaaagcaatgtttgatgctgggcatggttgcacatgcctttaatcaagataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaaataaaagcaatgtttgatgctgggcatggttgcacatgcctttaatcaagataaa 560

                                                                       
Query: 361 ctcattcataaaccaattagaatattgtagtaagttgataaatttccattgggagctttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcattcataaaccaattagaatattgtagtaagttgataaatttccattgggagctttt 620

                                                                       
Query: 421 attttttttaaatctgcaattaatttttgagtacttagctgttataatcattgtaatcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attttttttaaatctgcaattaatttttgagtacttagctgttataatcattgtaatcca 680

                                                                       
Query: 481 catcctttattatgaatttgtgtacatatgtacttacaaaaacataattttactgtagtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catcctttattatgaatttgtgtacatatgtacttacaaaaacataattttactgtagtc 740

                                                                       
Query: 541 acaaatttgttggtttggctttctaatccagcttatactgtatcttctccaaccctccca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaaatttgttggtttggctttctaatccagcttatactgtatcttctccaaccctccca 800

                                                             
Query: 601 tcccctggttcttctcacgtagatcaggctgtcctagacctctttacctt 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcccctggttcttctcacgtagatcaggctgtcctagacctctttacctt 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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