Query= MSMg01no527_g21.b1 MSMg01no527_g21.b1 CHROMAT_FILE:
MSMg01no527_g21.b1 PHD_FILE: MSMg01no527_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:40 2005
(585 letters)
>mm_chr6_18810114_18811096
Length = 983
Score = 998 bits (516), Expect = 0.0
Identities = 557/576 (96%), Gaps = 11/576 (1%)
Strand = Plus / Minus
Query: 19 taagccttttaccccataaaaatccctagctttcgagcctcggggtcaaatccactgtct 78
|||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||
Sbjct: 983 taagccctttaccccataaaaacccctagcttttgagcctcggggtcgaatccactgtct 924
Query: 79 cctgagtgagatgtttcgacccgccattaaactgcctcatgtgtttgcagcaagaaggat 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 cctgtgtgagatgtttcgacccgccattaaactgcctcatgtgtttgcagcaagaaggat 864
Query: 139 tctcgtgtttctttgggtg----ctctctctctcccgagactagagt-----gggggggt 189
|||| |||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 863 tctcatgtttctttgggtgctctctctctctctcccgagactagagtggggggggggggt 804
Query: 190 ccctgaaagagggtcttacagttgcaggctttactccatgccactaagctggtgtcttgc 249
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccctgaaagggggtcttacagttgcaggctttactccatgccactaagctggtgtcttgc 744
Query: 250 ccacacagttaatcttttgaatcttccaaacaaaaccaactctttttctctaaggatgaa 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccacacagttaatcttttgaatcttccaaacaaaaccaactctttttctctaaggatgaa 684
Query: 310 gcacaaattttgtcctagtacatttcccttcttccttcacagtttccaacatagttttat 369
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 683 gcacaaattttgtcctagtacatttcccttcttcctt--cagtttccaacatagttttat 626
Query: 370 ttagacagtgagctggcatgttcaggacaaccatgaggttcagtgatacatgagaattca 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttagacagtgagctggcatgttcaggacaaccatgaggttcagtgatacatgagaattca 566
Query: 430 gaggactcagcaacatgactgttgcagttagagtctattagagtgaaaaagtatatacga 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaggactcagcaacatgactgttgcagttagagtctattagagtgaaaaagtatatacga 506
Query: 490 tgcaattaaagagaaaccagctttgcttcctgtgtggctgcatataccacttctgttgtc 549
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 tgcaattaaagagaaaccagctttgcttcctgtgtggctgcacataccacttctgttgtc 446
Query: 550 tctggacaacaatgtctgacattatgtactaataat 585
||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctggacaacaatgtctgacattatgtactaataat 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 983
Length adjustment: 10
Effective length of query: 575
Effective length of database: 973
Effective search space: 559475
Effective search space used: 559475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_g21.g1 MSMg01no527_g21.g1 CHROMAT_FILE:
MSMg01no527_g21.g1 PHD_FILE: MSMg01no527_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:40 2005
(532 letters)
>mm_chr6_18626270_18627199
Length = 930
Score = 959 bits (496), Expect = 0.0
Identities = 523/532 (98%), Gaps = 2/532 (0%)
Strand = Plus / Plus
Query: 1 aatgccagtggggcctaagttcttttgaagttatggaaaaagtaaatgctaaaataatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgccagtggggcctaagttcttttgaagttatggaaaaagtaaatgctaaaataatta 260
Query: 61 agggcaggcagattatagggagaatgattaaatcggtggcgggaaaacaacctttttaat 120
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 agggcagacagattatagggagaatgattaaattggtggcgggaaaacaacctttttaat 320
Query: 121 gacattagaatcctgccattcttacatacccattatgcagagtattttctgtttgatccc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gacattagaa-cctgccattcttacatacccattatgcagagtattttctgtttgat-cc 378
Query: 181 agggcttgagaaactgtagcatcaagtcatgttaattttatccaatgtttttaattttat 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agggcttgagaaactatagcatcaagtcatgttaattttatccaatgtttttaattttat 438
Query: 241 ttatttattattgtgggtgggatgcctcacaagttactcagttcaatttggaggacagag 300
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 439 ttatttattattgtgggtgggatgcctcacaagtgactcagttcaatttggaggtcagag 498
Query: 301 gacaatttatggatggaagcttattctttctttgcatccttttggattctaaggatcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gacaatttatggatggaagcttattctttctttgcatccttttggattctaaggatcaaa 558
Query: 361 ttcagtggtcaggtttggtatcaggtgtctttcccactgagatacacttcactgacccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttcagtggtcaggtttggtatcaggtgtctttcccactgagatacacttcactgacccct 618
Query: 421 actgtatatgtttaaaatggtcaaaattacctgttaaaagcatagtgaacatttttgccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actgtatatgtttaaaatggtcaaaattacctgttaaaagcatagtgaacatttttgccc 678
Query: 481 attgataggttttttcatgataacttctcctaattgtgtcactttgaatgta 532
||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 679 attgataggttttttcatgataacttctcctaaatgtgccactttgaatgta 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 930
Length adjustment: 10
Effective length of query: 522
Effective length of database: 920
Effective search space: 480240
Effective search space used: 480240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
