Query= MSMg01no528_i21.b1 MSMg01no528_i21.b1 CHROMAT_FILE:
MSMg01no528_i21.b1 PHD_FILE: MSMg01no528_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:11 2005
(685 letters)
>mm_chr6_76222320_76223403
Length = 1084
Score = 1243 bits (643), Expect = 0.0
Identities = 677/705 (96%), Gaps = 27/705 (3%)
Strand = Plus / Plus
Query: 7 gaattctttattgctttctttcactcagagtaaaattgcaactatttatccacgaaagct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaattctttattgctttctttcactcagagtaaaattgcaactatttatccacgaaagct 240
Query: 67 aacttataaaatagagtgcatgtcattcactagactatattgtatctaataatgaataca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacttataaaatagagtgcatgtcattcactagactatattgtatctaataatgaataca 300
Query: 127 ataaaaattaattttgctttggaggaaactgaaaaaaatcacaatttgaacaaaatgtat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataaaaattaattttgctttggaggaaactgaaaaaaatcacaatttgaacaaaatgtat 360
Query: 187 tttaattaacttaatattgttatttagatgaataagcatacacaaaagttcatacttttg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttaattaacttaatattgttatttagatgaataagcatacacaaaagttcatacttttg 420
Query: 247 taagcactgctttgtgataagaagagatttctttatttttatggcacctagtattagggg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taagcactgctttgtgataagaagagatttctttatttttatggcacctagtattagggg 480
Query: 307 acttctttttaattatttgggtaatt--------------------------ataatctg 340
|||||||||||||||||||||||||| ||||||||
Sbjct: 481 acttctttttaattatttgggtaatttcacaattatatatgcatatatatatataatctg 540
Query: 341 tctcacgtcctttctacactgcattcagtcctaacaaacactatagtcaataaactagct 400
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tctct-gtcctttctacactgcattcagtcctaacaaacactatagtcaataaactagct 599
Query: 401 ttttgcaagttacacaactcactatggtatccatgacaatgataaatgtagtcagaaagt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttttgcaagttacacaactcactatggtatccatgacaatgataaatgtagtcagaaagt 659
Query: 461 agagtttatgaagttccatacccatattaataggatggttataacatatacttattagtc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agagtttatgaagttccatacccatattaataggatggttataacatatacttattagtc 719
Query: 521 tggctagaaattgttaatgcccacagcctcagctttcaacatgttttctctacctgcctg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tggctagaaattgttaatgcccacagcctcagctttcaacatgttttctctacctgcctg 779
Query: 581 ctataaatagtatgtttcttagtcaccagcttttgctcattgtataaataagttcactca 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ctataaatagtatgtttcttagtcaccagcttttgctcattgtataaataagttcactca 839
Query: 641 atcttcccccatcaaattcccaatattattttgcccatgttagaa 685
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 atcttcccccatcaaattcccaatattattttgcccatgttagaa 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space: 724950
Effective search space used: 724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_i21.g1 MSMg01no528_i21.g1 CHROMAT_FILE:
MSMg01no528_i21.g1 PHD_FILE: MSMg01no528_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:11 2005
(290 letters)
>mm_chr6_76366527_76367216
Length = 690
Score = 499 bits (258), Expect = e-146
Identities = 280/290 (96%), Gaps = 5/290 (1%)
Strand = Plus / Minus
Query: 1 ccattcacagctgcccattgttgggttatttgggctataaactgtaagtcattactataa 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccattcacagctgcctattgttgggttatttgggctataaactgtaagtcattactataa 504
Query: 61 attcccttaatatagagagacatttcataagttctgtgactctagaggaccctggctaat 120
||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 503 attcccttaatatagagagtcattttataagttctgtgactctagagaaccctggctaat 444
Query: 121 acacaatctaattcatacttaatggaccaaataaccaggtgtagagttcttagggccagt 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 443 acacaatctaattcatacttaatgcaccaaataaccaggtgtagagttcttagggccagt 384
Query: 181 tcattcttcctttgaatcaagatgatttcaagtgttgatatagtctactggcagcacagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcattcttcctttgaatcaagatgatttcaagtgttgatatagtctactggcagcacagt 324
Query: 241 tttgtttttttgtttgtttgtttggttggttggttggttggttgtttttt 290
||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttt-----tttgtttgtttgtttggttggttggttggttggttgtttttt 279
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
