BAC Information

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BAC

Clone NameMSMg01-529A01
Chromosome6 (Build37)
Map Location 28,150,282 - 28,150,674
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041247, Grm8
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529A01.T7 (MSMg01no529_a01.b1)MSMg01-529A01.TJ (MSMg01no529_a01.g1)
ACCAG597985AG597986
length7381,847
length of high quality
(start - end)
557 (54 - 610)---
definitionCHROMAT_FILE: MSMg01no529_a01.b1 PHD_FILE: MSMg01no529_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:47 2005CHROMAT_FILE: MSMg01no529_a01.g1 PHD_FILE: MSMg01no529_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNTTTCTACTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCCAGGTTTCTCATTCCTTATCTCACAGGTGTGTAC
ACACCTTACAACATTTATTCTTTTCCTTTCTTTTCAGTGAATATTAACTT
CAATTTGCTTTTCTTCCGTGGTTTCCACTACATTCATGTTGAGGCAAAAT
TCAGGTCAAGTAGCGTATCATTAACAGTCTTTGATTCAGGAATAAGATTC
ATACAAAGTACACCCCAAGAAATGGACATAGGGGAATGAGGACAGACAGG
ACTCAGGCAATTAAAATCCAAGACGTTGTCTCCTCTCTGTTCGCTGAAGC
ACCATCTTTCTCATGACAAACCCAAGACCAAGGTGCTCTGTGACAAGACG
TCCTGAGGTGGTGCAACACACACACACACACCTACTCACCCCAAATAGGG
TACATACCATCAAGTAGAGTTCAATGTTTATGTCTAACCCTTTAATCTTT
TTGATAATAACTTTATATACAGTAAGGTATAAACTAAGACATTCATTACA
TATTGACAAATGCATATACCCGTCTAATTCAAACCCCAAACAAGTTATGG
AACACCCAGGAGGCTGGAGAGGTGGCTCAGTGGGTAAGAGCACTGACTGC
TCTTCCGAAGGTCCTGAGGTCAAATCTCAGCAACCACATGGTGGCTCACA
AACATCCATAAGGAAATCTGACGCCCTCTTCTGTAGTG
GCAGCTGTACCGCACGGTGGGCGCTGCGCGTCTTATGTGTTGAGTGTAGT
GAGAGTGTAGATGCGGCGAGGCGCGCGGTCGCATTCACACCTCTCTACAC
GGATACTTGTACGAGAGGAGGNCCGCAATATCTCACAACTTCCCGAACAG
CGCATGTTGTTTGTTGTTCTGCGTTCGTTCGTCGCGCTCATTATATAATT
CGATCTACACTAAAGGTGCGCGTACGCTCGGNTGATTTAGCATGTNCCGT
CGTCATCACAGCGCCTTTGCCGGCGCTGTTGNTGTATACTTATACTCACT
CGTGTCGGGACGACCGAACTCATTAGTACATACATGCAGCAATATCTAAT
TGCTTATATATATACATCACTGNTGCTCAGACGCGTCGCGACTACATTAT
TATCNGCTCGAANTCATCGGCGCCATGTAATTCCTNGATTGTAGGCGCAT
TCTGACANGTGGTGGTGAGCGTGTGTATGTCACGCGGTTGCTGCACGATG
ACGCGCGACGGTGTGCTATATTAATTATACTAGNTATAGCGCACGGCATG
TAGGTGAGCGACATCGTGTCACACATATGTAGGGGACAGGCGTTGATGNC
CGCTGCGTTGAGACAATATGTGTGTGCTGTACTGACACAGAGATGGTTTT
CTGATGATACCCCATACTGCATTATTCTGTCCTCGACCACATGCTCACGC
ATACTAACCACGATTGTTGTGTAAGCCGTAATTAGTGATGTAACGTATAA
GATATGGAGGGTGCGCGCGCGACGCGGAGGCGCGTTGTGATTATGATACA
TGAGNGCGCAGCCGCCATGTTGNGAGAAGCATAGTAGACCAGATGTATGA
CGGATGGTACATGTATTAGTGTACGAGATAGCGTAACAGACGAAGATGAG
GATGGAACCAGATTAGCGCGTCGCGCANAGATGATGTAGATGTACGATAG
ACGCGCAAAGCAACGCGGCTGATTGTCGCNGTATATGTCTATCAGATGCG
TTNGTCACGATACAATTATTANTATGACTGAGAAGAATGCAGAAATGATC
GTGGGACTAGCGCAGACAGGCTCTCTGAGTATCTTTGATACGCTCTNTCT
TATCAAACTACGCGACACACTCAATGNTATAACGCTTGNCGACGTCTATA
TATGATGGCTCTGGNCGCGATTCGTGNTGACAGTTCTAGAGCGCGCGACA
GACCGCANTTGTATGTAGTCAGGGTCGACGTGCACGATATAGTATATGAG
ACTACCGAGCGCGATCGAGCGTATTACAGTATTCTTACTCGACTAGNACT
GAGGTACGCATTACACAGTATACTGAACGTAGTTGTATTCGTGATATCTA
GCGCTGAGANACTTGTGTNGTTTATCATTTGTCACACGATCACATCAGCA
CGACATCATTCTCATGTGTATCTATCTCTTTTTACTCACGTAACCGCCAC
ACGCACGTGTTNGTTACGTGTAANCGATGTATNCGTAGNCACGCTGCAGC
TAGATGATNGCGAATCTTGGACGCGCGATATCTAGTGCGTACGCGACGTC
TGTTGNCGCGCAGCTATCATGTATACTATTGCAGACTATACAGCTAGACG
ATCCTNTCTATTATGTATATTGTCTGCGCTCGACGTCACATCTATTATGT
CGTTGAGACCGTACGTAACNTGCAGACGNTATNAGTACACAAACTTCATC
ATCTTTATATGTACTNTGTAGATGCGACGATGTGNCTGAACGACATCGAG
CGATGCATTATAATNGCAAGCTACGATGANTACAGGTGATCTGTCTACGC
AGGATGTCGTTACAGTATAGAGCACTCGCTAAAGAGCTGATGAGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_a01.b1 MSMg01no529_a01.b1 CHROMAT_FILE:
MSMg01no529_a01.b1 PHD_FILE: MSMg01no529_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:47 2005
         (557 letters)



>mm_chr6_28149918_28150874
          Length = 957

 Score =  745 bits (385), Expect = 0.0
 Identities = 391/393 (99%)
 Strand = Plus / Plus

                                                                       
Query: 165 tcattaacagtctttgattcaggaataagattcatacaaagtacaccccaagaaatggac 224
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 365 tcattaacagtctttgattcaggaataagattcatacaaattacaccccaagaaatggac 424

                                                                       
Query: 225 ataggggaatgaggacagacaggactcaggcaattaaaatccaagacgttgtctcctctc 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ataggggaatgaggacagacaggactcaggcaattaaaatccaagacgttgtctcctctc 484

                                                                       
Query: 285 tgttcgctgaagcaccatctttctcatgacaaacccaagaccaaggtgctctgtgacaag 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 485 tgttcgctgaagcaccatctttctcatgacaaacccaagaccaaggtgctcagtgacaag 544

                                                                       
Query: 345 acgtcctgaggtggtgcaacacacacacacacacctactcaccccaaatagggtacatac 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 acgtcctgaggtggtgcaacacacacacacacacctactcaccccaaatagggtacatac 604

                                                                       
Query: 405 catcaagtagagttcaatgtttatgtctaaccctttaatctttttgataataactttata 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 catcaagtagagttcaatgtttatgtctaaccctttaatctttttgataataactttata 664

                                                                       
Query: 465 tacagtaaggtataaactaagacattcattacatattgacaaatgcatatacccgtctaa 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tacagtaaggtataaactaagacattcattacatattgacaaatgcatatacccgtctaa 724

                                            
Query: 525 ttcaaaccccaaacaagttatggaacacccagg 557
           |||||||||||||||||||||||||||||||||
Sbjct: 725 ttcaaaccccaaacaagttatggaacacccagg 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)