BAC Information

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BAC

Clone NameMSMg01-529D11
Chromosome6 (Build37)
Map Location 126,184,754 - 126,185,094
singlet/doubletsinglet
Overlap geneLOC100043565
Upstream geneCd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529D11.T7 (MSMg01no529_d11.b1)MSMg01-529D11.TJ (MSMg01no529_d11.g1)
ACCAG598148AG598149
length761778
length of high quality
(start - end)		639 (49 - 687)420 (77 - 496)
definitionCHROMAT_FILE: MSMg01no529_d11.b1 PHD_FILE: MSMg01no529_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:05 2005CHROMAT_FILE: MSMg01no529_d11.g1 PHD_FILE: MSMg01no529_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAAAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTAGAC
TATGCCGGGGCCTAGCAAACACAGAAGTGGATGCCCACAGTCAGCTAATG
GATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAG
CAAAAGGGATCTGCAACCCTATAGGTGGATCAACATTATGAACTAACCGG
TACCCAGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAG
TCGGCCATCACTGTGAAGAGAGGCCCATTGGACACACAAACTTTATATGC
CCCAGAAAAGG

NCCCGATGCTGTTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATCTAGTGTGCCCAGATGGGAA
ATTAGACCAGATGCTGCATTGCCTATGTGCAATGAAGCAGGACCAGTACT
GTATTTCTGGTATGTCCTCACAGCAGTATCAGCAAGCCTTCCTAAACAAG
TGTTGGACTACAGTGCAGAAGGATCACAGGGCTCCCAATGGAGGAGCTAG
AGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAA
CATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGT
ATCAAAAATGGCCTAGTCTGCCATCACTGGAAAGAGAGGCCCATTGGACA
CGCAAACTGTATATGCCCCAGTACAGGGGAATGTCAGGGCCCAAAAAAAA
AAAAAAATGGGAATGAGTGGGTAGGGAAGTGGGGGGAGGGTATGGNNNNN
NNTNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNN
NTTNNNNTNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTT
TTTTTTTTTTTTNTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTNTTTTTTNNNNNTTTTTTTTTTNTTTTNNTT
TTTTTTTNNNTTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTGNNTTTTTT
TGTGTGTGTTTTTTCGTTTGTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_d11.g1 MSMg01no529_d11.g1 CHROMAT_FILE:
MSMg01no529_d11.g1 PHD_FILE: MSMg01no529_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:05 2005
         (420 letters)



>mm_chr6_126184754_126185573
          Length = 820

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%), Gaps = 1/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatctagtgtgcccagatgggaaattagaccagatgctgcattgcctatgtgcaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acatctagtgtgcccagatgggaaattagaccagatgctgcattgcctatgtgcaatgaa 282

                                                                       
Query: 61  gcaggaccagtactgtatttctggtatgtcctcacagcagtatcagcaagccttcctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gcaggaccagtactgtatttctggtatgtcctcacagcagtatcagcaagccttcctaaa 222

                                                                       
Query: 121 caagtgttggactacagtgcagaaggatcacagggctcccaatggaggagctagagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 caagtgttggactacagtgcagaaggatcacagggctcccaatggaggagctagagaaag 162

                                                                       
Query: 181 tacccaaggagctaaagggatctgcaaccctataggtggaacaacattatgaactaacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tacccaaggagctaaagggatctgcaaccctataggtggaacaacattatgaactaacca 102

                                                                       
Query: 241 gtaccccggagctcttgactctagctgcatatgtatc-aaaaatggcctagtctgccatc 299
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 101 gtaccccggagctcttgactctagctgcatatgtatcaaaaaatggcctagtctgccatc 42

                                                    
Query: 300 actggaaagagaggcccattggacacgcaaactgtatatgc 340
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  actggaaagagaggcccattggacacgcaaactgtatatgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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