BAC Information

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BAC

Clone NameMSMg01-529E09
Chromosome6 (Build37)
Map Location 89,168,416 - 89,169,101
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839
Downstream gene4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529E09.T7 (MSMg01no529_e09.b1)MSMg01-529E09.TJ (MSMg01no529_e09.g1)
ACCAG598192AG598193
length750746
length of high quality
(start - end)		690 (52 - 741)506 (81 - 586)
definitionCHROMAT_FILE: MSMg01no529_e09.b1 PHD_FILE: MSMg01no529_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:10 2005CHROMAT_FILE: MSMg01no529_e09.g1 PHD_FILE: MSMg01no529_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNTTAACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGGATTTTCTGTCTGTCTGACCTTGACACCTGCAGATCA
GACACTGTTTCCCCAGTGCTGGGATTAAAAGTGGGTTCTTTCATCCTGCC
TTGCTAGGCAATTTTCCTTTGAAGCTCAGGCTTTTTGACTGGGTTTGTGG
TGGGGGAAGCCTAACAGCTGTCCTCTAGTTGCTCATGCTTTGGTAGTCAT
AGCTAAACCACAGCCCGGAAGGGACTGCCCATGGACCCCCTGTTGTTAGG
TCCTAAGTGCCCCATCTCCCAAATGACAGTTCTGGAGACAATGTCATAAA
CAGAAGAACGATCACCAGGTCAACAGAAGGACTGTTACTGGGGAACAGAG
GCCTAAAGCTGGGCCTCTGTTTACCCGGAGCCTTCTTTAACCTGTCCCAA
AGATCAAGTACCTTGGTCAAGGGCATCATTTCTGGTCAACCCAAACAGCC
TGTATCAGCTCAAAGATAACCACTCTGCTGGGATAGAAATTGAAGGCTTT
TCCACCAAATGGCCTTTTTTCACCCTGGCCTTGGCCTTAGCACTGTGATC
CCCACTAACACTTTCTTTATACCCATGGGGTGGTTCACTTGGGCGGTTTC
ACTGTGCCCTCGCTTATGATTACACTAATAACTGTTGTTCCAGGCATCAG
CTTGTATTCTTTTTTTTTTTTTAATTTCTTTCCTTTTTTTATGATTCGGG


NNCCCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCTATGTCCTCTACCA
TCATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTA
GGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGA
GTGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCT
GGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTC
CTCTGTTGATTTTGTTACCCTCTATCATTAGGCGTGGGAGACAAGCTCTC
TTCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCT
CTCAGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAA
GGTGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCA
GGAAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTC
TGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGATGATGGTGC
CGCCCCATAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACAGCTGGCAC
TCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGG
AGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_e09.b1 MSMg01no529_e09.b1 CHROMAT_FILE:
MSMg01no529_e09.b1 PHD_FILE: MSMg01no529_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:10 2005
         (690 letters)



>mm_chr6_89168212_89169301
          Length = 1090

 Score = 1272 bits (658), Expect = 0.0
 Identities = 679/686 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggattttctgtctgtctgaccttgacacctgcagatcagacactgtttcccca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gaattcaggattttctgtctgtctgaccttgacacctgcagatcagacactgtttcccca 831

                                                                       
Query: 65  gtgctgggattaaaagtgggttctttcatcctgccttgctaggcaattttcctttgaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gtgctgggattaaaagtgggttctttcatcctgccttgctaggcaattttcctttgaagc 771

                                                                       
Query: 125 tcaggctttttgactgggtttgtggtgggggaagcctaacagctgtcctctagttgctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tcaggctttttgactgggtttgtggtgggggaagcctaacagctgtcctctagttgctca 711

                                                                       
Query: 185 tgctttggtagtcatagctaaaccacagcccggaagggactgcccatggaccccctgttg 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 710 tgctttggtagtcatagctaaaccacagcccggaaggtactgcccatggaccccctgttg 651

                                                                       
Query: 245 ttaggtcctaagtgccccatctcccaaatgacagttctggagacaatgtcataaacagaa 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttaggtcctaagtgccccttctcccaaatgacagttctggagacaatgtcataaacagaa 591

                                                                       
Query: 305 gaacgatcaccaggtcaacagaaggactgttactggggaacagaggcctaaagctgggcc 364
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 590 gaacgatcaccaggtcaacagaaggactgttactggggaatagaggcctaaagctgggcc 531

                                                                       
Query: 365 tctgtttacccggagccttctttaacctgtcccaaagatcaagtaccttggtcaagggca 424
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tctgtttacccggagcctcctttaacctgtcccaaagatcaagtaccttggtcaagggca 471

                                                                       
Query: 425 tcatttctggtcaacccaaacagcctgtatcagctcaaagataaccactctgctgggata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tcatttctggtcaacccaaacagcctgtatcagctcaaagataaccactctgctgggata 411

                                                                       
Query: 485 gaaattgaaggcttttccaccaaatggccttttttcaccctggccttggccttagcactg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaaattgaaggcttttccaccaaatggccttttttcaccctggccttggccttagcactg 351

                                                                       
Query: 545 tgatccccactaacactttctttatacccatggggtggttcacttgggcggtttcactgt 604
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 350 tgatccccactaacactttctttatacccatagggtggttcacttgggcggtttcactgt 291

                                                                       
Query: 605 gccctcgcttatgattacactaataactgttgttccaggcatcagcttgtattctttttt 664
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 290 gccctcgcttatgattacactaataactgttgttccaggcatcagcttgtgttctttttt 231

                                     
Query: 665 tttttttaatttctttccttttttta 690
           ||||||||||||||||| ||||||||
Sbjct: 230 tttttttaatttctttctttttttta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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