BAC Information

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BAC

Clone NameMSMg01-529L08
Chromosome6 (Build37)
Map Location 89,378,897 - 89,379,322
singlet/doubletsinglet
Overlap geneChchd6
Upstream geneEefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1
Downstream geneTxnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529L08.T7 (MSMg01no529_l08.b1)MSMg01-529L08.TJ (MSMg01no529_l08.g1)
ACCAG598525AG598526
length749745
length of high quality
(start - end)
426 (266 - 691)88 (123 - 210)
definitionCHROMAT_FILE: MSMg01no529_l08.b1 PHD_FILE: MSMg01no529_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:47 2005CHROMAT_FILE: MSMg01no529_l08.g1 PHD_FILE: MSMg01no529_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGCCTCTAACTTTACAGCTATGGGTTTGTCCTTGGGAATT
TTTGTTCTTTTTTTCTACAGATAACCAGCATACCCCCCCACACGCAGCAT
TAAGACCCTGTAATTTTATTGAGGGTCATATCATCTATCAGTAGCAAAGT
TAGAATTAAGACGCACAGCTCTTGATTTGACTTTTACTTTGTGTCAGGCT
ATACATTTTGTTTTCATACTTTAGATATTCACTAGCCAAATATGTTCTGC
AAATGTAAAAAAAAAACAAAAACCTACCTAACAAGCAGCCCTAAAGCATA
GCTAGCTGCCTGGTGTTTGTTAGAGTGCTGTAACTCCCTACTGCCTGCCT
CCTCCCCATGCTCTGCCAGTGGAGGGCTTACACTGGTAGATTACCTTGTC
AGTCCTACTTTCTCCAAGTGCACCCTTAAATTCCCTCCCTGCCACGGCTT
TTGTACATCCAGGTTAAGGACTGCTCTATTCTCATAGCTATACAAACTCT
GTGCTGGTCGTTCTCTAACACCTGCTCCCTGGCCTCAAGAAGTCCTGGGG
ATCCAATCCCAGTCTATAAGCCCAGGTCTGGGCAAGTGAATCTGACCTCT
CAGTACTGCAACACTCTCAGAGATCAGTTTGCTCACATGGCTTTAAACAG
AACTTTGACCTTTTCATTCTGTTTATCAGGAACTTCTTGGAAGTTTTTC
CCCCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATGTAAACCAAGCTGGCCAC
GAACTTGTAGAAATGTTCTGGGATTAAAGGTATGAGCTAGCATGCCTAGC
AAAAGTAGAACTTTCTAGAAAGGAGAAAAAAATATATATATATGCCATTC
TTTTTTGATAACATGACAAATAATAAAGATAAAATTCTTAGTTCAAGGAG
AGATCACTTTAAAATCCTGGCATGTTGCAGAATTAAACATAAAAGAAAAA
TCACGGACTTCTAGGAGCTGGGTGTTTCAGGCGGAAATGACTCTTTGAAA
AGGGTAGAAGATCACAAAATTCAAAGGAAGAGACAGAACACACTGAATGC
ATTCGGATGTAAAACTCAGGGACACCAACAATGCAGACCAAAATGAAAAC
ACAGGCCAGCTGGGCGAGCTGTCAGCGCTACAGTTAACCCAGAAAGACTG
GTACCAAGACTACGGGAAAGGCCGGAGTCAGGGAAATGCTAAGGGTCCCA
GCAAAGAGGAAGCAGAAGACAACGGGCGGCGAGTTCACGAGGGGACTGTG
CATGATTGAATCTCTTGAGAAAGGACTCTCAACCCAAAGGAACCTATAAG
GCGCAGCGAGAGCTCCCACTGGCTTTACGTTTTTGGAGGGTTTTGTTTTA
TCATGTTGTTAGAGGAGTGAGTTTGTGTCTCTGCGTGTGTCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_l08.b1 MSMg01no529_l08.b1 CHROMAT_FILE:
MSMg01no529_l08.b1 PHD_FILE: MSMg01no529_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:47 2005
         (426 letters)



>mm_chr6_89378697_89379522
          Length = 826

 Score =  816 bits (422), Expect = 0.0
 Identities = 425/426 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactttagatattcactagccaaatatgttctgcaaatgtaaaaaaaaaacaaaaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atactttagatattcactagccaaatatgttctgcaaatgtaaaaaaaaaacaaaaacct 567

                                                                       
Query: 61  acctaacaagcagccctaaagcatagctagctgcctggtgtttgttagagtgctgtaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acctaacaagcagccctaaagcatagctagctgcctggtgtttgttagagtgctgtaact 507

                                                                       
Query: 121 ccctactgcctgcctcctccccatgctctgccagtggagggcttacactggtagattacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccctactgcctgcctcctccccatgctctgccagtggagggcttacactggtagattacc 447

                                                                       
Query: 181 ttgtcagtcctactttctccaagtgcacccttaaattccctccctgccacggcttttgta 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttgtcagttctactttctccaagtgcacccttaaattccctccctgccacggcttttgta 387

                                                                       
Query: 241 catccaggttaaggactgctctattctcatagctatacaaactctgtgctggtcgttctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catccaggttaaggactgctctattctcatagctatacaaactctgtgctggtcgttctc 327

                                                                       
Query: 301 taacacctgctccctggcctcaagaagtcctggggatccaatcccagtctataagcccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taacacctgctccctggcctcaagaagtcctggggatccaatcccagtctataagcccag 267

                                                                       
Query: 361 gtctgggcaagtgaatctgacctctcagtactgcaacactctcagagatcagtttgctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtctgggcaagtgaatctgacctctcagtactgcaacactctcagagatcagtttgctca 207

                 
Query: 421 catggc 426
           ||||||
Sbjct: 206 catggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)