BAC Information

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BAC

Clone NameMSMg01-529O06
Chromosome6 (Build37)
Map Location 99,047,288 - 99,219,120
singlet/doubletdoublet
Overlap geneFoxp1
Upstream geneGm765, LOC666019, LOC665963, LOC665979
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529O06.T7 (MSMg01no529_o06.b1)MSMg01-529O06.TJ (MSMg01no529_o06.g1)
ACCAG598662AG598663
length726730
length of high quality
(start - end)		590 (56 - 645)525 (86 - 610)
definitionCHROMAT_FILE: MSMg01no529_o06.b1 PHD_FILE: MSMg01no529_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:01 2005CHROMAT_FILE: MSMg01no529_o06.g1 PHD_FILE: MSMg01no529_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,218,535 - 99,219,120)(99,047,288 - 99,047,812)
sequence
CATTTTTCAAATTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCCTGTTAGTCCCAAGTCCTAGGCTACCCCTTTCCT
TAATGAAGCCGTTGTAGACATCGTATCCGATCGGTTCTGGAAATGTTGCT
GTAAGTCTATCTTACCACATTAAGAGGATAATCGGTAGACTTAGAAGGTC
CCCATCTGGACTGTGGAGTTCTTTCCCTGTGAGATGTTTTGCCTTTTGAG
ATAGCTCTCGCGTTTCTTCATCTGTTCAGCCCAGAGAAGTGCGTATGAAA
AGTCAGTGACTCCAGATCCATCTGCCGTTATTATTTCCCGCTGATAATTG
GCTTGAACAATGAAAAGCCTGTGTGTGTCTGGAGCCTTTGAAACTATACA
CTTGTTTTCTGGAGCTCTAGCTGCCGTGCCCCCCACCCTCCCTCCCCCTT
CATTCTCTCTAGGTTACAGCAAGTGGAGCTGGGATGGGGATGACATCTTT
GACTCTGTACACCAGTACATGTCACTCAGCCTGCAGAGCTTGCATACGGA
TTTCTGTCCCAATCCCTGTCTGTGCCATTGGCTCCTGTTGTCTGAGAGCC
TTCCAGCAATCAGCTCAGGCTGGGCTCCTATGCAGGGATCTCTTACCTGG
GGTGTCGTCTTGATTTCACTGTCCTCGTTAAAATATTAATTTAGAGTACA
GTATCTAATACCTATGGAATCAGATG

TTCTTTTCCTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTCTTTTGATGT
CACATTCAAAGCAATGGCAGCTTGATAGACATTCAAGTCTGAAAGCAAAT
CCAGACGCTGAAGATAAACCGCCAGGATATGACAGGCAGAAGCATCTAAA
GCTTACAGAAATGAAGAGAACAGCATGTCGCCCGAGTATTACAATAGCAG
AAATCAAGAGACATATTAGGTGGAACTGATCAGCCACAAAAACAGTTCAA
AAGGCAGATCACAGAAACGGGATGAGGGGAAGGGGGTGCGGAATGGGGGA
ATGGGATGAATCTGGGTTTTCTGCCTCACCTCCCTCTTGAGCCTCCGAGC
CTGCCTCTTCCCTCCATGAGGGTGGAGCGTCCAAAGCAGAGTTTCTTCTC
TAACCCGGCAGGTCCATTTGCAGAGGTTACAAAGGATTTGCTAACAGTGT
GCTTCAAGGGGCAGGGGAGAAAGGAAGGCACATGCCCAGGCTTCCCCATG
CTACACCGCACTGCCAGGCTCTTTCTGTTCCCAGAAGTAGCAGAGGAGAG
CACCCAGGCTGGCCCATGGGAGGTGGGCATTCAGAACGCTCCCGCATAAT
CCAACTTGGGATGGGACTATCACTCTAAGATGCTGAAGCAAGGAAACTGA
CTGTCTGAGCCCCCCCTTGATTCATGCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_o06.b1 MSMg01no529_o06.b1 CHROMAT_FILE:
MSMg01no529_o06.b1 PHD_FILE: MSMg01no529_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:01 2005
         (590 letters)



>mm_chr6_99218331_99219320
          Length = 990

 Score = 1118 bits (578), Expect = 0.0
 Identities = 584/586 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctgttagtcccaagtcctaggctacccctttccttaatgaagccgttgtagac 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 790 gaattccctgttagtcccaagtcctaggttacccctttccttaatgaagccgttgtagac 731

                                                                       
Query: 65  atcgtatccgatcggttctggaaatgttgctgtaagtctatcttaccacattaagaggat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atcgtatccgatcggttctggaaatgttgctgtaagtctatcttaccacattaagaggat 671

                                                                       
Query: 125 aatcggtagacttagaaggtccccatctggactgtggagttctttccctgtgagatgttt 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aatcggcagacttagaaggtccccatctggactgtggagttctttccctgtgagatgttt 611

                                                                       
Query: 185 tgccttttgagatagctctcgcgtttcttcatctgttcagcccagagaagtgcgtatgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tgccttttgagatagctctcgcgtttcttcatctgttcagcccagagaagtgcgtatgaa 551

                                                                       
Query: 245 aagtcagtgactccagatccatctgccgttattatttcccgctgataattggcttgaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aagtcagtgactccagatccatctgccgttattatttcccgctgataattggcttgaaca 491

                                                                       
Query: 305 atgaaaagcctgtgtgtgtctggagcctttgaaactatacacttgttttctggagctcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atgaaaagcctgtgtgtgtctggagcctttgaaactatacacttgttttctggagctcta 431

                                                                       
Query: 365 gctgccgtgccccccaccctccctcccccttcattctctctaggttacagcaagtggagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gctgccgtgccccccaccctccctcccccttcattctctctaggttacagcaagtggagc 371

                                                                       
Query: 425 tgggatggggatgacatctttgactctgtacaccagtacatgtcactcagcctgcagagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgggatggggatgacatctttgactctgtacaccagtacatgtcactcagcctgcagagc 311

                                                                       
Query: 485 ttgcatacggatttctgtcccaatccctgtctgtgccattggctcctgttgtctgagagc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttgcatacggatttctgtcccaatccctgtctgtgccattggctcctgttgtctgagagc 251

                                                         
Query: 545 cttccagcaatcagctcaggctgggctcctatgcagggatctctta 590
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cttccagcaatcagctcaggctgggctcctatgcagggatctctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_o06.g1 MSMg01no529_o06.g1 CHROMAT_FILE:
MSMg01no529_o06.g1 PHD_FILE: MSMg01no529_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:01 2005
         (525 letters)



>mm_chr6_99047088_99048012
          Length = 925

 Score =  969 bits (501), Expect = 0.0
 Identities = 519/525 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttcttttgatgtcacattcaaagcaatggcagcttgatagacattcaagtctgaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttcttttgatgtcacattcaaagcaatggcagcttgatagacattcaagtctgaaag 260

                                                                       
Query: 61  caaatccagacgctgaagataaaccgccaggatatgacaggcagaagcatctaaagctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatccagacgctgaagataaaccgccaggatatgacaggcagaagcatctaaagctta 320

                                                                       
Query: 121 cagaaatgaagagaacagcatgtcgcccgagtattacaatagcagaaatcaagagacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaatgaagagaacagcatgtcgcccgagtattacaatagcagaaatcaagagacata 380

                                                                       
Query: 181 ttaggtggaactgatcagccacaaaaacagttcaaaaggcagatcacagaaacgggatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaggtggaactgatcagccacaaaaacagttcaaaaggcagatcacagaaacgggatga 440

                                                                       
Query: 241 ggggaagggggtgcggaatgggggaatgggatgaatctgggttttctgcctcacctccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggaagggggtgcggaatgggggaatgggatgaatctgggttttctgcctcacctccct 500

                                                                       
Query: 301 cttgagcctccgagcctgcctcttccctccatgagggtggagcgtccaaagcagagtttc 360
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 cttgagcctccaagcctgcctcttccctgcatgagggtggagcgtccaaagcagagtttc 560

                                                                       
Query: 361 ttctctaacccggcaggtccatttgcagaggttacaaaggatttgctaacagtgtgcttc 420
           |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 ttctctaaccgggctggtccatttgcagaggttacaaaggatttgctaacaatgtgcttc 620

                                                                       
Query: 421 aaggggcaggggagaaaggaaggcacatgcccaggcttccccatgctacaccgcactgcc 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 aaggggcaggggagaaaggaaggcacatgcccaggcttccccatgctataccgcactgcc 680

                                                        
Query: 481 aggctctttctgttcccagaagtagcagaggagagcacccaggct 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggctctttctgttcccagaagtagcagaggagagcacccaggct 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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