BAC Information

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BAC

Clone NameMSMg01-530D21
Chromosome6 (Build37)
Map Location 122,827,505 - 122,977,587
singlet/doubletdoublet
Overlap geneNecap1, EG384482, Clec4a1, Clec4a3, Clec4a4
Upstream geneMug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1
Downstream geneClec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530D21.T7 (MSMg01no530_d21.b1)MSMg01-530D21.TJ (MSMg01no530_d21.g1)
ACCAG598926AG598927
length755775
length of high quality
(start - end)		681 (75 - 755)595 (83 - 677)
definitionCHROMAT_FILE: MSMg01no530_d21.b1 PHD_FILE: MSMg01no530_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:29 2005CHROMAT_FILE: MSMg01no530_d21.g1 PHD_FILE: MSMg01no530_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,827,505 - 122,828,174)(122,976,998 - 122,977,587)
sequence
NNNGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCGCGGAATTCTTTAGACTTTCTTTTGGAGAGGGATTAAGGATCAAGGAT
GAAGGAAACTGCTGCCATGTATCATTTATTGAAAATTTGTTTATTTAAGG
ACACTACATACACAAGATAAAAATGATGAAATATCTACCTGCTCATAAGT
TTTCATTTGATTTCCACGTGTGTATCATGGCTTACATGTACCCCCCACCC
CCCAAATAAATAAATAAGCAAGCAAGCACATTTTTTAAAAATGTTAATTC
CTGAGGACGTGTAGAATGATCTACTCTGGATTATATTCAGGTACTTATAG
TCTCTGAAGGCAGAACATCACGAGAGGAGATGAAAGCATTTATCTTACAG
TCCTGTTGAGAAGCTCGGCTGGGGCTGGGGACTAAGTGGTAGGGGCTCAG
CTAGCACACTCAAGGGCCTGGGTTTGATCCCAAACAGTGCAGAGACAAAA
AACCTATGTTTTTGCTTGATTTTCTTTTACCGTAGTATCTTGTTAGACTT
TTTCTTTTTACTTTTCTTCCTGGCAAGTATTGGTAGTTTTTTTGTTTGTT
TGTTTTTGTTTTTTGTTTTGAGGCAGGGCCTTAATGTTGTAGTTGAGGCA
AGCCTCCCTCTCCCTCTGATCCGGCTTTTAACTTCCAAAGGATTTTAGGC
ATGCGCACCACCACACTTTGAAGTCTTCTGGTTCATAAGAGATAAATTAT
TATTG

NTTTTGGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAGCCACACCTCCCAC
TGCCACAAGGTGTAGCTACACATTTGAGCCCACTGCACTGTGGGGGAGGC
GATGCTGCCTCCCATAGCTAGGACATACACCGCAGCCGATTACAGCCCTC
ATAAAGTTGTGGTTGGTGATGCCACCTGAGAGAAGCATTACACGAGGAGT
GCCATTGGCCTTGACAGGACACAAGGGAGAGGTCAAGTATCCAGTGAGAT
GCAGCTCAATGCATAAATGTGAGACTTGACTGATACCAGCTACAGACATG
AAGGGACAGCAGAAATGGATTTTTCTCTGGGAGGTGAAGGACAAGGTCAT
GGCATGAGGTCAATCTAATATAGAAAATAGAGAGAACACAAAAAAAAATT
CTGAGATCAGGCAAACTTCGGATTGAGTAAAAAGAAAAATGTTTGGAATT
ATGCTTAAACGCTAAAAAGGGAAATAGGCTGTGCAACAAGAATCATAGAC
AAGTATAAGGAATTTGAAATTAATAAAATTAAAAGGAATAACACAATTAA
GGCTGAGAAAAACAATAAAACAGAACATTTGGACCTAGGTAATGCCATTT
TGAATGGCTAANAGATAGAGACAGAATCAACAAATGGCTTAATTGACACA
TTAGTAATTAGTGTGATTATTATTCTAGTATTTCTTATATTAGTCAATCA
TTATAAAAGCTTTTTCTGCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_d21.b1 MSMg01no530_d21.b1 CHROMAT_FILE:
MSMg01no530_d21.b1 PHD_FILE: MSMg01no530_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:29 2005
         (681 letters)



>mm_chr6_122827306_122828386
          Length = 1081

 Score = 1236 bits (639), Expect = 0.0
 Identities = 663/671 (98%), Gaps = 3/671 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggagagggattaaggatcaaggatgaaggaaactgctgccatgtatcatttattgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttggagagggattaaggatcaaggatgaaggaaactgctgccatgtatcatttattgaaa 259

                                                                       
Query: 61  atttgtttatttaaggacactacatacacaagataaaaatgatgaaatatctacctgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 260 atttgtttatttaaggacactacatacacaagataaaaatgatgagatatctacctgccc 319

                                                                       
Query: 121 ataagttttcatttgatttccacgtgtgtatcatggcttacatgtaccccccacccccca 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 ataagttttcatttgatttccacgtgtgtattatggcttacatgtaccccccacccccca 379

                                                                       
Query: 181 aataaataaataagcaagcaagcacattttttaaaaatgttaattcctgaggacgtgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aataaataaataagcaagcaagcacattttttaaaaatgttaattcctgaggacgtgtag 439

                                                                       
Query: 241 aatgatctactctggattatattcaggtacttatagtctctgaaggcagaacatcacgag 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatgatctactctggattagattcaggtacttatagtctctgaaggcagaacatcacgag 499

                                                                       
Query: 301 aggagatgaaagcatttatcttacagtcctgttgagaagctcggctggggctg-gggact 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 500 aggagatgaaagcatttatcttacagtcctgttgagaagctcggctggggctgtggg-ct 558

                                                                       
Query: 360 aagtggtaggggctcagctagcacactcaagggcctgggtttgatcccaaacagtgcaga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagtggtaggggctcagctagcacactcaagggcctgggtttgatcccaaacagtgcaga 618

                                                                       
Query: 420 gacaaaaaa-cctatgtttttgcttgattttcttttaccgtagtatcttgttagactttt 478
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gacaaaaaaacctatgtttttgcttgattttcttttaccgtagtatcttgttagactttt 678

                                                                       
Query: 479 tctttttacttttcttcctggcaagtattggtagtttttttgtttgtttgtttttgtttt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctttttacttttcttcctggcaagtattggtagtttttttgtttgtttgtttttgtttt 738

                                                                       
Query: 539 ttgttttgaggcagggccttaatgttgtagttgaggcaagcctccctctccctctgatcc 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttgttttgaggcagggccttaatgttgtagttgaggcaagcctccctctccctctgatcc 798

                                                                       
Query: 599 ggcttttaacttccaaaggattttaggcatgcgcaccaccacactttgaagtcttctggt 658
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 799 ggcttttaacttccaaaggattttaggcatgcgcaccaccacactttgaagtcttcaggt 858

                      
Query: 659 tcataagagat 669
           |||||||||||
Sbjct: 859 tcataagagat 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_d21.g1 MSMg01no530_d21.g1 CHROMAT_FILE:
MSMg01no530_d21.g1 PHD_FILE: MSMg01no530_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:29 2005
         (595 letters)



>mm_chr6_122976794_122977787
          Length = 994

 Score = 1106 bits (572), Expect = 0.0
 Identities = 586/591 (99%), Gaps = 1/591 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gccacacctcccactgccacaaggtgtagctacacatttgagcccactgcactgtggggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gccacacctcccactgccacaaggtgtagctacacatttgagcccactgcactgtggggg 735

                                                                       
Query: 65  aggcgatgctgcctcccatagctaggacatacaccgcagccgattacagccctcataaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aggcgatgctgcctcccatagctaggacatacaccgcagccgattacagccctcataaag 675

                                                                       
Query: 125 ttgtggttggtgatgccacctgagagaagcattacacgaggagtgccattggccttgaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttgtggttggtgatgccacctgagagaagcattacacgaggagtgccattggccttgaca 615

                                                                       
Query: 185 ggacacaagggagaggtcaagtatccagtgagatgcagctcaatgcataaatgtgagact 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 614 ggacacaagggagaggtcaagtatccagtgagatgcagatcaatgcataaatgtgagact 555

                                                                       
Query: 245 tgactgataccagctacagacatgaagggacagcagaaatggatttttctctgggaggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgactgataccagctacagacatgaagggacagcagaaatggatttttctctgggaggtg 495

                                                                       
Query: 305 aaggacaaggtcatggcatgaggtcaatctaatatagaaaatagagagaacacaaaaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 494 aaggacaaggtcatggcatgaggtcaatctaatatagaaaatagagagaacac-aaaaaa 436

                                                                       
Query: 365 aattctgagatcaggcaaacttcggattgagtaaaaagaaaaatgtttggaattatgctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aattctgagatcaggcaaacttcggattgagtaaaaagaaaaatgtttggaattatgctt 376

                                                                       
Query: 425 aaacgctaaaaagggaaataggctgtgcaacaagaatcatagacaagtataaggaatttg 484
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 375 aaacgctaaaaagggaaataggctgtgcaacaagaatcatagacaactataaggaatttg 316

                                                                       
Query: 485 aaattaataaaattaaaaggaataacacaattaaggctgagaaaaacaataaaacagaac 544
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 315 aaattaataaaattaaaaggaataacacaattaaggatgagaaaaacaataaaacagaac 256

                                                              
Query: 545 atttggacctaggtaatgccattttgaatggctaanagatagagacagaat 595
           ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 255 atttggacctaggtaatgccattttgaatggctaaaagatagagacagaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space:   575640
Effective search space used:   575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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