Query= MSMg01no530_h19.b1 MSMg01no530_h19.b1 CHROMAT_FILE:
MSMg01no530_h19.b1 PHD_FILE: MSMg01no530_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:49 2005
(684 letters)
>mm_chr6_72699556_72700639
Length = 1084
Score = 1174 bits (607), Expect = 0.0
Identities = 651/667 (97%), Gaps = 7/667 (1%)
Strand = Plus / Minus
Query: 18 ttgttttgtttgtttgtttgtttgtttgtttgtttgtttgtttttttgaaacagggtctc 77
||||||| ||| ||| |||||| |||||| ||||||| ||||||||||||||||||||
Sbjct: 1059 ttgtttt-ttt-tttttttgtt--tttgtt--tttgttt-tttttttgaaacagggtctc 1007
Query: 78 actgtgtagttctagctgtcctggaactcactctgtaaaacaggctggcctcaaactcac 137
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 1006 actgtgtagttctagctgtcctggaactcactctgcaaaccaggctggcctcaaactcac 947
Query: 138 agagatctgcccgccttggtctcccaagtgctgggattaaagtagtgtgccactacgcct 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 agagatctgcccgccttggtctcccaagtgctgggattaaagtagtgtgccactacgcct 887
Query: 198 acctgacaatattttaaaggatccaaatgtgccttataagcttagattccagaggagaaa 257
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 aactgacaatattttaaaggatccaaatgtgccttataagcttagattccagaggagaaa 827
Query: 258 attaaacgtatccagcaatttttcttcccaaaaggcaaatataacaaggctttcttctca 317
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 826 attaaacgtatccagcaaattttcctcccaaaaggcaaatataacaaggctctcttctca 767
Query: 318 agcataggggcccaggtgcctgcaattgtccatcggaacatgcatgggcctgtctttgcc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agcataggggcccaggtgcctgcaattgtccatcggaacatgcatgggcctgtctttgcc 707
Query: 378 tgagctatgggattacaagacacaggtgaggttgcaggagctggtcttttctgattgaca 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgagctatgggattacaagacacaggtgaggttgcaggagctggtcttttctgattgaca 647
Query: 438 gagacaggcaaagagagccacaggagacctcgggagaaggttggattgagaagtacacat 497
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 646 gagacaggcaaagagagccacgggagacctcgggagaaggttgggttgagaagtacacat 587
Query: 498 gggtgcggtcacacattgttttactcagctcaaaactacctcctaattgttaatgtagac 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gggtgcggtcacacattgttttactcagctcaaaactacctcctaattgttaatgtagac 527
Query: 558 taaatggaacccatatacactggacacaaacaggggaccagttttgcatttagaaaagct 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 taaatggaacccatatacactggacacaaacaggggaccagttttgcatttagaaaagct 467
Query: 618 ccaagtcagtttttaaacaataaatttattgagatttgcataccacaaaaatccatgctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ccaagtcagtttttaaacaataaatttattgagatttgcataccacaaaaatccatgctt 407
Query: 678 ttcatga 684
|||||||
Sbjct: 406 ttcatga 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_h19.g1 MSMg01no530_h19.g1 CHROMAT_FILE:
MSMg01no530_h19.g1 PHD_FILE: MSMg01no530_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:49 2005
(613 letters)
>mm_chr6_72617150_72618162
Length = 1013
Score = 1154 bits (597), Expect = 0.0
Identities = 609/613 (99%)
Strand = Plus / Plus
Query: 1 agtaatgagttaactacttttactctgtcaagctggcaacggccttttttactcctcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaatgagttaactacttttactctgtcaagctggcaacggccttttttactcctcttt 260
Query: 61 aattaccatgggcacttttcttgatgccctgttggtgggagaataaattagtaagccttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaccatgggcacttttcttgatgccctgttggtgggagaataaattagtaagccttt 320
Query: 121 tcttgtgcaatttggaggcatgtatcaagtcttccaaaggcgtaccacctcaaggaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgtgcaatttggaggcatgtatcaagtcttccaaaggcgtaccacctcaaggaatgt 380
Query: 181 atcctaaggaaataattaaagattcgagcaaactacagctgcaggaatgttcactgggac 240
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 381 atcctaaggaaataattaaagattcgagcaaactacagctgcaggaacgctcactgggac 440
Query: 241 catctacaagagctgaaagatattaaatacctcatgctacaatgatatttgagtttacgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctacaagagctgaaagatattaaatacctcatgctacaatgatatttgagtttacgg 500
Query: 301 agcaagtgaatatttataggcatgcgaaggtacttactagacactctcaaggggaaaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcaagtgaatatttataggcatgcgaaggtacttactagacactctcaaggggaaaagc 560
Query: 361 aggacacccagcaagtaaagaattcacttttgtaaagcagacatctttatatgtgaattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggacacccagcaagtaaagaattcacttttgtaaagcagacatctttatatgtgaattg 620
Query: 421 aagatctacgcggacagataggaggatgtaggttcttctactggaccagcgggcggggtc 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 aagatctacgcggacagataggaggatgtgggttcttctactggaccagcgggcggggtc 680
Query: 481 agtttgttattcctccgacatcagggttgcctagaggagctatgaacccacagatttcca 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 agtttgttattcctccgacatcagagttgcctagaggagctatgaacccacagatttcca 740
Query: 541 accctcctcccctgccactcaactgttccagggcagggccctaaccttctgcctcattta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accctcctcccctgccactcaactgttccagggcagggccctaaccttctgcctcattta 800
Query: 601 atggctccccagg 613
|||||||||||||
Sbjct: 801 atggctccccagg 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
