Query= MSMg01no530_k02.b1 MSMg01no530_k02.b1 CHROMAT_FILE:
MSMg01no530_k02.b1 PHD_FILE: MSMg01no530_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:01 2005
(682 letters)
>mm_chr6_33121707_33122789
Length = 1083
Score = 1222 bits (632), Expect = 0.0
Identities = 667/682 (97%), Gaps = 9/682 (1%)
Strand = Plus / Minus
Query: 6 aatttcaatatccctagatcactgcaaaatcatttagaagtgcctctgactgatgggcta 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aatttcaatatccctagatcactgcaaaatcatttagaagtgcctctgactgatgggcta 648
Query: 66 ttctttttctcttccatcatcacagcatgtagactctgtgcttgccataattaactaact 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttctttttctcttccatcatcacagcatgtagactctgtgcttgccataattaactaact 588
Query: 126 tagcattaatagcaaacttcaatgatgtatatcagccctcagacacaccaagatgaagga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tagcattaatagcaaacttcaatgatgtatatcagccctcagacacaccaagatgaagga 528
Query: 186 gggaaagagaactaaac-tttttttttcttgcttaactcacaatcccctcaggaaatcag 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gggaaagagaactaaacttttttttttcttgcttaactcacaatcccctcaggaaatcag 468
Query: 245 aagccaaggaaacttccagcaatgaaattaaaaactattcccttaatggagtactccgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aagccaaggaaacttccagcaatgaaattaaaaactattcccttaatggagtactccgaa 408
Query: 305 taataaggaacaagagtggctgtgacttcactgtaaaggacatttgatgttgcttcagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 taataaggaacaagagtggctgtgacttcactgtaaaggacatttgatgttgcttcagaa 348
Query: 365 ttgaaactgttagcacacaataagccttcaataaactttaatgagagagggaggaggaca 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 347 ttgaaactgttagcacacaataagccttccataaactttaatgagagagggaggaggaca 288
Query: 425 taaaagtgggaggcaaagggacaagagaaaatggctgtctcaggttactgctagcttttg 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaaaagtgggaggcaaagggacaagagaaaatggctgtctcaggttactgctagcttttg 228
Query: 485 agaaagccagtatcatagaatgcacacagacacatacacatgcacacacaaacacacaca 544
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 227 agaaagccagtatcatagaatgcacacagacacacacacatgcacacacaaacacacaca 168
Query: 545 gacacataaacacacacacagacagatacatacatgcacacacagacacacacaga---- 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gacacataaacacacacacagacagatacatacatgcacacacagacacacacagagaga 108
Query: 601 cacacacagagagacacatacacagacacacacacatgaacacaagacacacacatgcac 660
|||| ||| ||| ||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 107 cacatacacagacacaca--caca--cacacacacatgaacacaagacacacacatgcac 52
Query: 661 atacagactcacacatagacac 682
||||||||||||||||||||||
Sbjct: 51 atacagactcacacatagacac 30
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space: 721056
Effective search space used: 721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_k02.g1 MSMg01no530_k02.g1 CHROMAT_FILE:
MSMg01no530_k02.g1 PHD_FILE: MSMg01no530_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:01 2005
(636 letters)
>mm_chr6_33071228_33072263
Length = 1036
Score = 1118 bits (578), Expect = 0.0
Identities = 621/636 (97%), Gaps = 2/636 (0%)
Strand = Plus / Plus
Query: 1 tttgaattgagagagcatgagtttatttatttcataggaaaacaaaacaaaacaaaacaa 60
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 203 tttgagttgagagagcatgagtttatttatttcataggaaaa--aaacaaaacaaaacaa 260
Query: 61 aaacacctgaggcacgctaagctaaataccatccccaaagtcatagaaagaaaaaaacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacctgaggcacgctaagctaaataccatccccaaagtcatagaaagaaaaaaacta 320
Query: 121 aattagatattagaactcaggtctggcatccctaaagtccttaacagctcttttattaaa 180
||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct: 321 aattagatattagaactcatgtctgccgtccctaaagtccttaacagctcttttattaaa 380
Query: 181 gttggtcttaatgattatctggaggacatgctcaaaagaagctgtttgggttgagagcat 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gttggtcttaatgattatctggaggacatgcttaaaagaagctgtttgggttgagagcat 440
Query: 241 cacagggccaacttgattttttacttgaatttccaatcgttgtcccatccaatgtcttca 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cacagggccaacttgattttttacttgaatttccaatcattgtcccatccaatgtcttca 500
Query: 301 tttgttgcacacacaggaatgcatgatgggaacatagtaaaggaggaacggtttctgtgg 360
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tttgttgcacacataggaatgcatgatgggaacatagtgaaggaggaacggtttctgtgg 560
Query: 361 tagtaaaggagatgttttctgtgacaaagacttaatccagacaatgttatcacaattagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtaaaggagatgttttctgtgacaaagacttaatccagacaatgttatcacaattagg 620
Query: 421 gcatatcctgaaggcattctaaactctcaactgacaatgaggtccaaatgtggagtgccg 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 gcatatcctgaaggcattctaaactctcagctgacaatgaggtccaaatgtggagtgccg 680
Query: 481 gctggcattcttcatcaattatcttctgaatcacgaagtttgacatgtcaagtctaggaa 540
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 681 gctggcattcttcatcaattatcttctgaatcacgcagtttgacatgtccagtctaggaa 740
Query: 541 tcaccaccataaagtctactgagacttttgcaagggaaagtctcccacatttgtctttgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaccaccataaagtctactgagacttttgcaagggaaagtctcccacatttgtctttgt 800
Query: 601 aacttggtgcatcttctaatgcaatgcttattccag 636
|||||||| ||||||||||| |||||||||||||||
Sbjct: 801 aacttggtacatcttctaattcaatgcttattccag 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|