BAC Information

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BAC

Clone NameMSMg01-530K02
Chromosome6 (Build37)
Map Location 33,071,430 - 33,122,413
singlet/doubletdoublet
Overlap genenone
Upstream genePlxna4, Chchd3, LOC100039118
Downstream geneGm1401, Exoc4, Lrguk, Slc35b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530K02.T7 (MSMg01no530_k02.b1)MSMg01-530K02.TJ (MSMg01no530_k02.g1)
ACCAG599222AG599223
length763769
length of high quality
(start - end)
682 (47 - 728)636 (77 - 712)
definitionCHROMAT_FILE: MSMg01no530_k02.b1 PHD_FILE: MSMg01no530_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:01 2005CHROMAT_FILE: MSMg01no530_k02.g1 PHD_FILE: MSMg01no530_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,121,736 - 33,122,413)(33,071,430 - 33,072,063)
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTTCAATATCCCTAGATCACTGCAAAATCATTTAGAAGTGCCTCTGA
CTGATGGGCTATTCTTTTTCTCTTCCATCATCACAGCATGTAGACTCTGT
GCTTGCCATAATTAACTAACTTAGCATTAATAGCAAACTTCAATGATGTA
TATCAGCCCTCAGACACACCAAGATGAAGGAGGGAAAGAGAACTAAACTT
TTTTTTTCTTGCTTAACTCACAATCCCCTCAGGAAATCAGAAGCCAAGGA
AACTTCCAGCAATGAAATTAAAAACTATTCCCTTAATGGAGTACTCCGAA
TAATAAGGAACAAGAGTGGCTGTGACTTCACTGTAAAGGACATTTGATGT
TGCTTCAGAATTGAAACTGTTAGCACACAATAAGCCTTCAATAAACTTTA
ATGAGAGAGGGAGGAGGACATAAAAGTGGGAGGCAAAGGGACAAGAGAAA
ATGGCTGTCTCAGGTTACTGCTAGCTTTTGAGAAAGCCAGTATCATAGAA
TGCACACAGACACATACACATGCACACACAAACACACACAGACACATAAA
CACACACACAGACAGATACATACATGCACACACAGACACACACAGACACA
CACAGAGAGACACATACACAGACACACACACATGAACACAAGACACACAC
ATGCACATACAGACTCACACATAGACACTCACATAGAGATACACACAGAC
ATACACAGAGAGA
GCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAATTGAGAGAGCATGAGTTT
ATTTATTTCATAGGAAAACAAAACAAAACAAAACAAAAACACCTGAGGCA
CGCTAAGCTAAATACCATCCCCAAAGTCATAGAAAGAAAAAAACTAAATT
AGATATTAGAACTCAGGTCTGGCATCCCTAAAGTCCTTAACAGCTCTTTT
ATTAAAGTTGGTCTTAATGATTATCTGGAGGACATGCTCAAAAGAAGCTG
TTTGGGTTGAGAGCATCACAGGGCCAACTTGATTTTTTACTTGAATTTCC
AATCGTTGTCCCATCCAATGTCTTCATTTGTTGCACACACAGGAATGCAT
GATGGGAACATAGTAAAGGAGGAACGGTTTCTGTGGTAGTAAAGGAGATG
TTTTCTGTGACAAAGACTTAATCCAGACAATGTTATCACAATTAGGGCAT
ATCCTGAAGGCATTCTAAACTCTCAACTGACAATGAGGTCCAAATGTGGA
GTGCCGGCTGGCATTCTTCATCAATTATCTTCTGAATCACGAAGTTTGAC
ATGTCAAGTCTAGGAATCACCACCATAAAGTCTACTGAGACTTTTGCAAG
GGAAAGTCTCCCACATTTGTCTTTGTAACTTGGTGCATCTTCTAATGCAA
TGCTTATTCCAGAGCAGATTCACAAAAGTGTCTGTTGAGAGAATTAATTG
GGAGGGAGTAAACATGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_k02.b1 MSMg01no530_k02.b1 CHROMAT_FILE:
MSMg01no530_k02.b1 PHD_FILE: MSMg01no530_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:01 2005
         (682 letters)



>mm_chr6_33121707_33122789
          Length = 1083

 Score = 1222 bits (632), Expect = 0.0
 Identities = 667/682 (97%), Gaps = 9/682 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   aatttcaatatccctagatcactgcaaaatcatttagaagtgcctctgactgatgggcta 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aatttcaatatccctagatcactgcaaaatcatttagaagtgcctctgactgatgggcta 648

                                                                       
Query: 66  ttctttttctcttccatcatcacagcatgtagactctgtgcttgccataattaactaact 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttctttttctcttccatcatcacagcatgtagactctgtgcttgccataattaactaact 588

                                                                       
Query: 126 tagcattaatagcaaacttcaatgatgtatatcagccctcagacacaccaagatgaagga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tagcattaatagcaaacttcaatgatgtatatcagccctcagacacaccaagatgaagga 528

                                                                       
Query: 186 gggaaagagaactaaac-tttttttttcttgcttaactcacaatcccctcaggaaatcag 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gggaaagagaactaaacttttttttttcttgcttaactcacaatcccctcaggaaatcag 468

                                                                       
Query: 245 aagccaaggaaacttccagcaatgaaattaaaaactattcccttaatggagtactccgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aagccaaggaaacttccagcaatgaaattaaaaactattcccttaatggagtactccgaa 408

                                                                       
Query: 305 taataaggaacaagagtggctgtgacttcactgtaaaggacatttgatgttgcttcagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 taataaggaacaagagtggctgtgacttcactgtaaaggacatttgatgttgcttcagaa 348

                                                                       
Query: 365 ttgaaactgttagcacacaataagccttcaataaactttaatgagagagggaggaggaca 424
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 347 ttgaaactgttagcacacaataagccttccataaactttaatgagagagggaggaggaca 288

                                                                       
Query: 425 taaaagtgggaggcaaagggacaagagaaaatggctgtctcaggttactgctagcttttg 484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaaaagtgggaggcaaagggacaagagaaaatggctgtctcaggttactgctagcttttg 228

                                                                       
Query: 485 agaaagccagtatcatagaatgcacacagacacatacacatgcacacacaaacacacaca 544
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 227 agaaagccagtatcatagaatgcacacagacacacacacatgcacacacaaacacacaca 168

                                                                       
Query: 545 gacacataaacacacacacagacagatacatacatgcacacacagacacacacaga---- 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 167 gacacataaacacacacacagacagatacatacatgcacacacagacacacacagagaga 108

                                                                       
Query: 601 cacacacagagagacacatacacagacacacacacatgaacacaagacacacacatgcac 660
           |||| ||| ||| |||||  ||||  ||||||||||||||||||||||||||||||||||
Sbjct: 107 cacatacacagacacaca--caca--cacacacacatgaacacaagacacacacatgcac 52

                                 
Query: 661 atacagactcacacatagacac 682
           ||||||||||||||||||||||
Sbjct: 51  atacagactcacacatagacac 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space:   721056
Effective search space used:   721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no530_k02.g1 MSMg01no530_k02.g1 CHROMAT_FILE:
MSMg01no530_k02.g1 PHD_FILE: MSMg01no530_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:01 2005
         (636 letters)



>mm_chr6_33071228_33072263
          Length = 1036

 Score = 1118 bits (578), Expect = 0.0
 Identities = 621/636 (97%), Gaps = 2/636 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaattgagagagcatgagtttatttatttcataggaaaacaaaacaaaacaaaacaa 60
           ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 203 tttgagttgagagagcatgagtttatttatttcataggaaaa--aaacaaaacaaaacaa 260

                                                                       
Query: 61  aaacacctgaggcacgctaagctaaataccatccccaaagtcatagaaagaaaaaaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacctgaggcacgctaagctaaataccatccccaaagtcatagaaagaaaaaaacta 320

                                                                       
Query: 121 aattagatattagaactcaggtctggcatccctaaagtccttaacagctcttttattaaa 180
           ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct: 321 aattagatattagaactcatgtctgccgtccctaaagtccttaacagctcttttattaaa 380

                                                                       
Query: 181 gttggtcttaatgattatctggaggacatgctcaaaagaagctgtttgggttgagagcat 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gttggtcttaatgattatctggaggacatgcttaaaagaagctgtttgggttgagagcat 440

                                                                       
Query: 241 cacagggccaacttgattttttacttgaatttccaatcgttgtcccatccaatgtcttca 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cacagggccaacttgattttttacttgaatttccaatcattgtcccatccaatgtcttca 500

                                                                       
Query: 301 tttgttgcacacacaggaatgcatgatgggaacatagtaaaggaggaacggtttctgtgg 360
           ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tttgttgcacacataggaatgcatgatgggaacatagtgaaggaggaacggtttctgtgg 560

                                                                       
Query: 361 tagtaaaggagatgttttctgtgacaaagacttaatccagacaatgttatcacaattagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtaaaggagatgttttctgtgacaaagacttaatccagacaatgttatcacaattagg 620

                                                                       
Query: 421 gcatatcctgaaggcattctaaactctcaactgacaatgaggtccaaatgtggagtgccg 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 gcatatcctgaaggcattctaaactctcagctgacaatgaggtccaaatgtggagtgccg 680

                                                                       
Query: 481 gctggcattcttcatcaattatcttctgaatcacgaagtttgacatgtcaagtctaggaa 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 681 gctggcattcttcatcaattatcttctgaatcacgcagtttgacatgtccagtctaggaa 740

                                                                       
Query: 541 tcaccaccataaagtctactgagacttttgcaagggaaagtctcccacatttgtctttgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaccaccataaagtctactgagacttttgcaagggaaagtctcccacatttgtctttgt 800

                                               
Query: 601 aacttggtgcatcttctaatgcaatgcttattccag 636
           |||||||| ||||||||||| |||||||||||||||
Sbjct: 801 aacttggtacatcttctaattcaatgcttattccag 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)