Query= MSMg01no530_l06.b1 MSMg01no530_l06.b1 CHROMAT_FILE:
MSMg01no530_l06.b1 PHD_FILE: MSMg01no530_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:07 2005
(673 letters)
>mm_chr6_5058817_5059890
Length = 1074
Score = 1230 bits (636), Expect = 0.0
Identities = 665/680 (97%), Gaps = 11/680 (1%)
Strand = Plus / Plus
Query: 5 gaattccaggcaggctgccctggtgccacgagagccgataatgttgctcttatctgatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattccaggcaggctgccctggtgccacgagagccgataatgttgctcttatctgatag 254
Query: 65 aaaatgtctggttctagagcactcttaaaactcccctgcaaagataatatttttcacttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaaatgtctggttctagagcactcttaaaactcccctgcaaagataatatttttcacttc 314
Query: 125 caaaatattttccacgcctgcacaggctaagtggagtgctgcaggtgatgctgacgaggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caaaatattttccacgcctgcacaggctaagtggagtgctgcaggtgatgctgacgaggc 374
Query: 185 ttctgcctgcccctttctggtagtcacacgtagacattttgattcagttacagttagtcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttctgcctgcccctttctggtagtcacacgtagacattttgattcagttacagttagtcg 434
Query: 245 tgtgcgtgtgcgtgtg----tgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgcacg---- 296
|||||||||||||||| |||||| |||||||||||||||||||||||||| ||
Sbjct: 435 tgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcg 494
Query: 297 --ttcttactgaaagcgataaacagagcccacactcagattagtttaaacaacagagtag 354
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cgttcttactgaaagctataaacagagcccacactcagattagtttaaacaacagagtag 554
Query: 355 atatttttgttagtaatggatgggaaaaaaatcatccaggcatatgaatttgctttattc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atatttttgttagtaatggatgggaaaaaaatcatccaggcatatgaatttgctttattc 614
Query: 415 tctaagagtataatacctctggaaaataattccttgtggttgtatatacatttccatgtt 474
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tctaagaatataatacctctggaaaataattccttgtggttgtatatacatttccatgtt 674
Query: 475 gtatattaaagaatattcttttgtggctttattcttgagtggcaggttatcatggctgtt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gtatattaaagaatattcttttgtggctttattcttgagtggcaggttatcatggctgtt 734
Query: 535 tatttgagagagg-gtgtgggggggtgttatctttacagcatcttgcctagagcccctca 593
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tatttgagagaggtgtgtgggggggtgttatctttacagcatcttgcctagagcccctca 794
Query: 594 gtagatgcttataaagttcatctttaattttttagagaaatggcacaagatcagaaccta 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gtagatgcttataaagttcatctttaattttttagagaaatggcacaagatcagaaccta 854
Query: 654 gatatccaagatctaatcca 673
||||||||||||||||||||
Sbjct: 855 gatatccaagatctaatcca 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space: 705432
Effective search space used: 705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_l06.g1 MSMg01no530_l06.g1 CHROMAT_FILE:
MSMg01no530_l06.g1 PHD_FILE: MSMg01no530_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:07 2005
(604 letters)
>mm_chr6_5115578_5116581
Length = 1004
Score = 1152 bits (596), Expect = 0.0
Identities = 602/604 (99%)
Strand = Plus / Minus
Query: 1 ctcttgtctacctagccttcattgcaccttcagtaaaatgaccatatcctcttcctttct 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctcttgtctacctagccttcattacaccttcagtaaaatgaccatatcctcttcctttct 745
Query: 61 actgacaaatcaagctaagctaattctttcaaaattaaatatataaatgaatccatggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actgacaaatcaagctaagctaattctttcaaaattaaatatataaatgaatccatggca 685
Query: 121 tgcatttaagattgtccaaagaagagcaaaatttggtaagagaatttttaacagtttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgcatttaagattgtccaaagaagagcaaaatttggtaagagaatttttaacagtttcca 625
Query: 181 aaatggagggaaacaagctcacattccttacttcatgaggctgagacagttgagtgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaatggagggaaacaagctcacattccttacttcatgaggctgagacagttgagtgtctg 565
Query: 241 tcttcatctgttttagtcttgccttctcagtcttggagatctgagaatgaaaatggttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcttcatctgttttagtcttgccttctcagtcttggagatctgagaatgaaaatggttta 505
Query: 301 aaataacccagtgctctaggctggacctgattccttcttggcttgcttcttgttgtgtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaataacccagtgctctaggctggacctgattccttcttggcttgcttcttgttgtgtga 445
Query: 361 gactaagggcttaatggatttgtcatccatcttcctctggctgattggtattgggaactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gactaagggcttaatggatttgtcatccatcttcctctggctgattggtattgggaactt 385
Query: 421 gatggtgaggctgtgtcagagggacaggggaagtggggacctgggggctcagctctttag 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacggtgaggctgtgtcagagggacaggggaagtggggacctgggggctcagctctttag 325
Query: 481 cttcatgcccagttccataattgtgctttcaagtgtaattctagctgccaatttacactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttcatgcccagttccataattgtgctttcaagtgtaattctagctgccaatttacactt 265
Query: 541 tgccagagttagaacttatttttagtttcatttccatgaaaaatgtgcactttgctcttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgccagagttagaacttatttttagtttcatttccatgaaaaatgtgcactttgctcttg 205
Query: 601 atgg 604
||||
Sbjct: 204 atgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
