CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCGGTTGATACAATCTGAAAAATAGTTTAAGAAAAAAAAACCT
TCTAAAATTGATTCTTCAAGGACATTACAAATTATGAAACTCAGGAGACA
GTGTTCTATTTGGCTTTATCACGAAGAAGCACCTCTTATAACTGGGTCTC
TTGTACTTTCTCAATATCTCCCTGCCTGGAGACGGGCTGGCAGCCTTCCC
AGGAACCATCTCATAGATAGCCACAATGATTTGGCAAGAAGATAATATTT
TTCTAGTCATTATGAAATACTTTTGAATAAAAGAAGCAATTGCTGTTCAG
ATCAGCAGTACTGTGCATATTAAGTGCTTCTATAGAAAAATATAATTTGA
AATCTTATTTGGACAGCTGAGCAGACTGAAGATCCTGTTTCTTTTTACTT
ATCACATTCAATTTTGGTATTAGCTCCCTGTGACTTCATTAAGATTTCGA
TTATCTCTTTGGAATATGAGCCTGGCAGATAAGTGGGGAGAGTGTCATTT
CAGGGTACTCAGAAAGAAGGCCATGTACAATTAAATTTCACTAAAATATA
GAGAAAAAAAATAACACACAGGTTATGTTAGAAGCTCTCCAATGTCAGGT
TGTTAATGCCCATGCTGAATTGGATTGTATGGAATTTTCACAAGGTAACT
GATTGGTAATGCCACAGGTATTGGGCAGTGCCCAGCAGAACATCATGGGA
TACACAATGGAT

TTTACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGGCCAACAGAGT
CATCTATCCTCAACCCTTGGGGCTCTCAGAGTCTGAACCACCAACCAAAG
AGCATAACCAGCTGGACCTAGGCCTCATTGCTCATGTGCAGCAGATGTGC
AGCTTGGCCTTCATGTGGGACCTGAACAACTGGAGCAGGGGCTATCTCAA
AAGTTATTGCCTGTACATGGGATATTCTTCTAACTGGGCTGCCTTGTCTG
GCATCAGTGGGAGAAGAAGTGCCTAGCCCCATAGAGACTTGAAGATCTGG
GGGGAGGGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN

Query= MSMg01no530_m08.b1 MSMg01no530_m08.b1 CHROMAT_FILE:
MSMg01no530_m08.b1 PHD_FILE: MSMg01no530_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:12 2005
         (652 letters)



>mm_chr6_23586602_23587655
          Length = 1054

 Score = 1226 bits (634), Expect = 0.0
 Identities = 649/654 (99%), Gaps = 2/654 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaaaaatagtttaag-aaaaaaaaaccttctaaaattgattcttcaaggacattaca 59
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tctgaaaaatagtttaagaaaaaaaaaaccttctaaaattgattcttcaaggacattaca 795

                                                                       
Query: 60  aattatgaaactcaggagacagtgttctatttggctttatcacgaagaagcacctcttat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 794 aattatgaaactcaggagacagtgttctatttggctttatcacgaagaaacacctcttat 735

                                                                       
Query: 120 aactgggtctcttgtactttctcaatatctccctgcctggagacgggctggcagccttcc 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aagtgggtctcttgtactttctcaatatctccctgcctggagacgggctggcagccttcc 675

                                                                       
Query: 180 caggaaccatctcatagatagccacaatgatttggcaagaagataatatttttctagtca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 674 caggaaccatctcatagatagccacaatgatttggcaagaagataatatctttctagtca 615

                                                                       
Query: 240 ttatgaaatacttttgaataaaagaagcaattgctgttcagatcagcagtactgtgcata 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttatgaaatacttttgaataaaagaagcaattgctgttcagatcagcagtactgtgcata 555

                                                                       
Query: 300 ttaagtgcttctatagaaaaatataatttgaaatcttatttggacagctgagcagactga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttaagtgcttctatagaaaaatataatttgaaatcttatttggacagctgagcagactga 495

                                                                       
Query: 360 agatcctgtttctttttacttatcacattcaattttggtattagctccctgtgacttcat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agatcctgtttctttttacttatcacattcaattttggtattagctccctgtgacttcat 435

                                                                       
Query: 420 taagatttcgattatctctttggaatatgagcctggcagataagtggggagagtgtcatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 taagatttcgattatctctttggaatatgagcctggcagataagtggggagagtgtcatt 375

                                                                       
Query: 480 tcagggtactcagaaagaaggccatgtacaattaaatttcactaaaatatagag-aaaaa 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 374 tcagggtactcagaaagaaggccatgtacaattaaatttcactaaaatatagagaaaaaa 315

                                                                       
Query: 539 aaataacacacaggttatgttagaagctctccaatgtcaggttgttaatgcccatgctga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aaataacacacaggttatgttagaagctctccaatgtcaggttgttaatgcccatgctga 255

                                                                 
Query: 599 attggattgtatggaattttcacaaggtaactgattggtaatgccacaggtatt 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 attggattgtatggaattttcacaaggtaactgattggtaatgccacaggtatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1054
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1044
Effective search space:   670248
Effective search space used:   670248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)