BAC Information

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BAC

Clone NameMSMg01-531C14
Chromosome6 (Build37)
Map Location 72,508,665 - 72,694,759
singlet/doubletdoublet
Overlap geneCapg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3
Upstream geneVps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6
Downstream geneKcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531C14.T7 (MSMg01no531_c14.b1)MSMg01-531C14.TJ (MSMg01no531_c14.g1)
ACCAG599629AG599630
length757745
length of high quality
(start - end)
258 (204 - 461)430 (80 - 509)
definitionCHROMAT_FILE: MSMg01no531_c14.b1 PHD_FILE: MSMg01no531_c14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:43 2005CHROMAT_FILE: MSMg01no531_c14.g1 PHD_FILE: MSMg01no531_c14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,508,665 - 72,508,922)(72,694,391 - 72,694,759)
sequence
CTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTCTTCCCCTAGGGGTTTGTGGCCTTTGGACTGCAGTGAT
AGACAAGAGAGAGTCTTTCTGGAGCTTGATTTTTTTTTGTAGGGGTGGGG
TGGGGAGGGCTCTTCCTGCCTGTTTCTCAAAACTGTTGGTAGAGACAACT
GGGTAACCCATGATTCCAGGTGAGGACTGAATTGTGTCTGTGTCATACTG
GGAACTGTCTTTCCTCTCCAGGTCTCTGATGCCACTGGACAGATGAATCT
GACCAAGGTGGCTGACTCCAGCCCTTTTGCCTCTGAACTGCTAATTCCAG
ATGACTGCTTTGTTCTGGACAACGGGCTGTGTGGCAAAATCTACATCTGG
AAGGGTATGTATGGCTCCTCTGTGTGAGCCTGAGGGCACCGCAGCTGCTC
TGAACCCAGCGGGCTCAGCCATCTCTGAAAACCTCAGCCCATCTCTATCT
CAGAACTTCAAGGGCCTGTTTAGTATATGGCTGGGCCCATCCCAGACATT
CAGATTCATTCTGGTCTGGCTTGGAGCCTGACCACCTGTATATTTAACAT
GCTTCCACGGCTTGCCTGAAGGTGCGTGAGAACTCTTGGCCCATGGCCCA
GCTCTCAAGGACCCTTCAATGGCTTGACTCATGTAGTTTTTTTATTCACC
CTCTCTACCCCTTCATTATGATCTTTATGCTTATGGGTTTTCCGTTTAGG
CCATCTG
CCTTTCTCCCTATTGATTTTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGTTGGCTGGCATGGTTG
GTCAGTGAACACTGGGGATCCATCAACTCCCACCTTACCTAGTGTATTTT
TTACATGAGTGCTTATGATCCAAAGTCTTGCTTGCATAACAGGCGCTTTA
CCAATGGAGCCATTTCTCCAGCGTCACTCCAACACTTTTTGAGGCAAGCT
CTGACTAAGTCAGCTCCTGGCTGGCCTGGAACTCACTATACAGACTGAAT
CAGACTGGCCTCACACATGTGGTCAGCCTCCAGTGCTGGGCTGCTGGGAG
AGAGGGTGGAACGTGAGTTCCTAACTCTTTCTAGGTGGTGGTGCTGCTTG
CCAGAATTAATAAACCTCTGGACTGTCATATCGCTCGGATTCTGGTCCCG
TCCCCCACCCTCATACCCTCACCTTCAAAAAACCTAACAGAATAAATAAC
ACTGGCATCGAGCCCTGTGTCTAATAGGAACTTTCTTTGCACCGTAGAGT
ATTTAAGTGATGCTGGCTAACGTCCCAGAGTCATACTGCCCCCTTACTCT
GCCTATGTGCATCCCTTGCTTCGGAGGCTGAAATGTTCCCTCTACCTGGC
AGTGCAAGAGTTTTGTTGATACCCTCGCGGCCTGCGTATGAGAGATCTGG
CATCCGAGATTGGTTTGCCTCCCTTTTATCTTGTGGAATGTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_c14.b1 MSMg01no531_c14.b1 CHROMAT_FILE:
MSMg01no531_c14.b1 PHD_FILE: MSMg01no531_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:43 2005
         (258 letters)



>mm_chr6_72508465_72509122
          Length = 658

 Score =  491 bits (254), Expect = e-143
 Identities = 257/258 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacccatgattccaggtgaggactgaattgtgtctgtgtcatactgggaactgtctttc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 taacccatgattccaggtgaggactgaattgtgtctgtgtcacactgggaactgtctttc 260

                                                                       
Query: 61  ctctccaggtctctgatgccactggacagatgaatctgaccaaggtggctgactccagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctccaggtctctgatgccactggacagatgaatctgaccaaggtggctgactccagcc 320

                                                                       
Query: 121 cttttgcctctgaactgctaattccagatgactgctttgttctggacaacgggctgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttgcctctgaactgctaattccagatgactgctttgttctggacaacgggctgtgtg 380

                                                                       
Query: 181 gcaaaatctacatctggaagggtatgtatggctcctctgtgtgagcctgagggcaccgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaaatctacatctggaagggtatgtatggctcctctgtgtgagcctgagggcaccgca 440

                             
Query: 241 gctgctctgaacccagcg 258
           ||||||||||||||||||
Sbjct: 441 gctgctctgaacccagcg 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no531_c14.g1 MSMg01no531_c14.g1 CHROMAT_FILE:
MSMg01no531_c14.g1 PHD_FILE: MSMg01no531_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:43 2005
         (430 letters)



>mm_chr6_72693930_72694759
          Length = 830

 Score =  675 bits (349), Expect = 0.0
 Identities = 364/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 62  agtgtattttttacatgagtgcttatgatccaaagtcttgcttgcataacaggcgcttta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 agtgtattttttacatgagtgcttatgatccaaagtcttgcttgcataacaggcgcttta 771

                                                                       
Query: 122 ccaatggagccatttctccagcgtcactccaacactttttgaggcaagctctgactaagt 181
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 770 ccaatggagccatttcttcagcgccactccaacactttttgaggcaagctctgactaagt 711

                                                                       
Query: 182 cagctcctggctggcctggaactcactatacagactgaatcagactggcctcacacatgt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cagctcctggctggcctggaactcactatacagactgaatcagactggcctcacacatgt 651

                                                                       
Query: 242 ggtcagcctccagtgctgggctgctgggagagagggtggaacgtgagttcctaactcttt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ggtcagcctccagtgctgggctgctgggagagagggtggaacgtgagttcctaactcttt 591

                                                                       
Query: 302 ctaggtggtggtgctgcttgccagaattaataaacctctggactgtcatatcgctcggat 361
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 590 ctaggtggtgctgctgcttgccagaattaataaacctctggactgtcatatcgctaggat 531

                                                                       
Query: 362 tctggtcccgtcccccaccctcataccctcaccttcaaaaaacctaacagaataaataac 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 530 tctggtcccgtcccccaccctcataccctcaccttcaaaaaacctaacagaataaataag 471

                    
Query: 422 actggcatc 430
           |||||||||
Sbjct: 470 actggcatc 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)