Query= MSMg01no531_f04.b1 MSMg01no531_f04.b1 CHROMAT_FILE:
MSMg01no531_f04.b1 PHD_FILE: MSMg01no531_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:55 2005
(634 letters)
>mm_chr6_93694855_93695889
Length = 1035
Score = 1131 bits (585), Expect = 0.0
Identities = 619/633 (97%), Gaps = 7/633 (1%)
Strand = Plus / Plus
Query: 5 gaattcttgcttttgagaga-aaagtcttacttctttttaaaaggcacagtgatttggtt 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgcttttgagagacaaagtcttacttctttttaaaaggcacagtgatttggtt 264
Query: 64 tacagatcattctaatcctgtgtgcacaaaatataaactttattgtgaagcgtgttcaaa 123
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 tacagatcattctaatcttgtgtgcacaaaatataaactttattgtgaagtgtgttcaaa 324
Query: 124 gcaaccaaaagacatttggaaagtcttttaggaatgtaagtgaaagtgacctaggttgga 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaaccaaaagacatttggaaagtcttttaggaatgtaagtgaaagtgacctaggttggg 384
Query: 184 catttagcctgggagcccagcactaagcccagcatgctgaaggccctgtgttcaattgct 243
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 catttagcctgggagcacagcactaagcctagcatgctgaaggccctgtgttcaattgct 444
Query: 244 agcgtctcgaaaaaataaatctttaattaattaaaaaaaaaaa--aacaacaccccaaat 301
|||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||
Sbjct: 445 agcgtctcgaaaaaataaatctttaactaatt----aaaaaaaccaacaacacctcaaat 500
Query: 302 agttgaaggctagtaagctaagcaacaccgcacttcagagttcgaacgcagagaacaaag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttgaaggctagtaagctaagcaacaccgcacttcagagttcgaacgcagagaacaaag 560
Query: 362 tcagtctacatacctcctcgctgcaccaacagtgtgacctcacttcccttgggacattca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagtctacatacctcctcgctgcaccaacagtgtgacctcacttcccttgggacattca 620
Query: 422 atcagcatatccacgacttgattgtgcgtcagggcctgcacgttcttcttattcacctcc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcagcatatccacgacttgattgtgcgtcagggcctgcacgttcttcttattcacctcc 680
Query: 482 acgataagatccccttctttgaggcctctgcagcgtggactgtcaacaatctgtttcact 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acgataagatccccttctttgaggcctctgcagcgtggactgtcaacaatctgtttcact 740
Query: 542 ctttggccacccccaccgggactgtctgcgatcgtaaagccaaatcccattggccctttg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctttggccacccccaccgggactgtctgcgatcgtaaagccaaatcccattggccctttg 800
Query: 602 actatgtgaacagttattagctctggctgggtg 634
|||||||||||||||||||||||||||||||||
Sbjct: 801 actatgtgaacagttattagctctggctgggtg 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space: 639600
Effective search space used: 639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_f04.g1 MSMg01no531_f04.g1 CHROMAT_FILE:
MSMg01no531_f04.g1 PHD_FILE: MSMg01no531_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:55 2005
(555 letters)
>mm_chr6_93854082_93855032
Length = 951
Score = 1009 bits (522), Expect = 0.0
Identities = 549/564 (97%), Gaps = 13/564 (2%)
Strand = Plus / Minus
Query: 1 catgcttgca-tttttaaaaaaaaatgattgccttctaactgatcctcgggccaaatgtg 59
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 catgcttgcatttttttaaaaaaaatgattgccttctaactgatcctcgggccaaatgtg 792
Query: 60 atccatggcttgctccttttcacaaatgaagg--------tgtttgtttgtttgtttgca 111
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 791 atccatggcttgctccttttcacaaatgaaggtgtttgtttgtttgtttgtttgtttgca 732
Query: 112 tagtctttcatttgggacatgatgggtttttacccctttctcaagcttttatgctataac 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tagtctttcatttgggacatgatgggtttttacccctttctcaagcttttatgctataac 672
Query: 172 tacaggggagagtgcctgtagcacggaatatagccccaaccccccagcttcagctattta 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tacaggggagagtgcctgtagcacggaatatagccccaaccccccagcttcagctattta 612
Query: 232 cttgaagacaatttgttatcccttaacttttttttttttttaaagaaaattttgctaatc 291
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 611 cttgaagacaatttgttatcccttaac---tttttttttttaaagaaaattttgctaatc 555
Query: 292 cttggcccaagtttgaagttaatgtaggggcatttatgaggaagctatagctaaagcccc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cttggcccaagtttgaagttaatgtaggggcatttatgaggaagctatagctaaagcccc 495
Query: 352 aaacccagttcttcaggagagagactttgaagaacttaatgggtaatggaatgagaaata 411
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 494 aaacccagttcttcaggagagagactttgaagaacttaat-ggtaatggaatgagaaata 436
Query: 412 caagggagaggaaggcttggaaatcacatgctagttctaggaggagtgagcatggaaatc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 caagggagaggaaggcttggaaatcacatgctagttctaggaggagtgagcatggaaatc 376
Query: 472 aaaaggtcacaaggggcatttaagtggagatgcccagcaaagtgggaggtgtttgagcct 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaaaggtcacaaggggcatttaagtggagatgcccagcaaagtgggaggtgtttgagcct 316
Query: 532 gacattaacctgagcaagttaaga 555
||||||||||||||||||| ||||
Sbjct: 315 gacattaacctgagcaagtcaaga 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 951
Length adjustment: 10
Effective length of query: 545
Effective length of database: 941
Effective search space: 512845
Effective search space used: 512845
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
