BAC Information

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BAC

Clone NameMSMg01-531F21
Chromosome6 (Build37)
Map Location 132,892,887 - 132,893,312
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1
Downstream geneTas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531F21.T7 (MSMg01no531_f21.b1)MSMg01-531F21.TJ (MSMg01no531_f21.g1)
ACCAG599785AG599786
length751750
length of high quality
(start - end)
527 (51 - 577)518 (85 - 602)
definitionCHROMAT_FILE: MSMg01no531_f21.b1 PHD_FILE: MSMg01no531_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:58 2005CHROMAT_FILE: MSMg01no531_f21.g1 PHD_FILE: MSMg01no531_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCGCTGTCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATAGG
ATCCGCGGAATTCTCTGTATACTCGGGATTCTCATCTCATAATGCGCATC
TATCACACTTACTCTGTTCAAATCATCTGAATGAACATCATTTAGCATTT
AGCTCTTCAATATTTAATCAGTATATTATAGATACTCATCAAATTCATTA
GGGTTTAAAAAATATCAGATTAGTTAAGTTAGAATCTGATTGTTTCTACT
TAAAACTAGTCAGCCAAATAAACTTTTGAGTTTTATTTTATTGGGTATTT
TACTTATTTGCGTTTCAAATCTTATCTCTTTTCTCGTTTTTCCCTCCGGA
AACCCCTATCCCCCCCACCCCCCGCTTTTTGGCACATACACATATACCGT
GCCCTTTTAAGATGATTTTTTTTTATTACTACATTTCAGATTCCATATTC
TAAATTGTCTTGACTGGTAAATAACTTTAATTGCATTAGGCAATATTTCA
CACTTACTTGATTCAATTAACCAACTGATGAATCATTTAACTTACTTGAT
TCAATCAACCCATTTCTTTTTTCTCCAAGGTAGTTTCACAGAGTATATTG
ATCACATTACGAAGCAGGTCCCATACCTAGACATTGTCGGCCGAAAGAAA
TATTGTATTGCATTGTATTGTATTGCATTGAATTGCACTTTCTTTCATAT
TTGAGGTCTAACGAGAATTTGTTTACCCATTTGATATTATTTAAGAGTAG
G
TTGTTCCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGTTCTATA
TAACATTTCTTGATTGGGTTTTTCCATTTTTTGGATGTTAGCATCTTGTA
TTCTTAAAATATTTTAGTTATTAAAATAAGATGTAGGTTCAGTGAAATTT
TTTTTCCTCCAATCTGTAGGTTGTCAATTTTTCCTATTGGCTATGTCCTT
TGCCTTTCAGAAGTTTTTTCAGTTTCATAAGGTCCCATTTATCAATTTTT
TATCTTAAGACCTGAGCTTAGCAAACACAGAAGTGGATGCTCACAGTCAG
CTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCC
AAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACT
AACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATG
GCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAAATTT
ATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGG
GTTAAGGGTAGTCGGGACTCCCCATGTTTAAAGAATAAAAGGGCATTTTT
AAATAATCTTAGTGATTCAATTGAATTTTTCAACTTTTCTTTTTAATAAA
ATTCGCCTTGTTCGAAAACATTCTTTTTCCTGTCTGGGTTCGCGCCGCGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_f21.b1 MSMg01no531_f21.b1 CHROMAT_FILE:
MSMg01no531_f21.b1 PHD_FILE: MSMg01no531_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:58 2005
         (527 letters)



>mm_chr6_132892887_132893813
          Length = 927

 Score =  712 bits (368), Expect = 0.0
 Identities = 414/430 (96%), Gaps = 5/430 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctctgtatactcgggattctcatctcataatgcgcatctatcacacttactctgt 67
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 426 gaattctctgtatactcgggattctcatctcataatgcacatctatcacacttactatgt 367

                                                                       
Query: 68  tcaaatcatctgaatgaacatcatttagcatttagctcttcaatatttaatcagtatatt 127
           ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 366 tcaaatcatctgaataaacatcatttaacatttagctcttcaatatttaatcagtacatt 307

                                                                       
Query: 128 atagatactcatcaaattcattagggtttaaaaaatatcagattagttaagttagaatct 187
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 306 atagatactcatccaattcattagggttttaaaaatatcagattagttaagttagaatct 247

                                                                       
Query: 188 gattgtttctacttaaaactagtcagccaaataaacttttgagttttattttattgggta 247
           ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 246 gattgtttctacttaaaactagtcatccaaataaacttt-gagttttattttattgggta 188

                                                                       
Query: 248 ttttacttatttgcgtttcaaatcttatctcttttctcgtttttccctccggaaacccct 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 187 ttttacttatttgcgtttcaaatcttatctcttttctcgtttttccctccggaaacccc- 129

                                                                       
Query: 308 at-cccccccaccccccgctttttggcacatacacatataccgtgcccttttaagatgat 366
           || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 128 attccccccccccccccgctttttggcacatacacatataccgtgcccttttaaaatgat 69

                                                                       
Query: 367 ttttttttattactacatttcagattccatattctaaattgtcttgactggtaaataact 426
           ||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 68  tttttt--attactacatttcaaattccatattctaaattgtcttgactggtaaataact 11

                     
Query: 427 ttaattgcat 436
           ||||||||||
Sbjct: 10  ttaattgcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)