BAC Information

Click to search

BAC

Clone NameMSMg01-531K06
Chromosome6 (Build37)
Map Location 60,906,471 - 61,067,247
singlet/doubletdoublet
Overlap geneMmrn1, LOC100041756, LOC100041764
Upstream geneEG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726, Snca, ENSMUSG00000064018
Downstream geneC130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531K06.T7 (MSMg01no531_k06.b1)MSMg01-531K06.TJ (MSMg01no531_k06.g1)
ACCAG599991AG599992
length757765
length of high quality
(start - end)		651 (53 - 703)476 (85 - 560)
definitionCHROMAT_FILE: MSMg01no531_k06.b1 PHD_FILE: MSMg01no531_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:20 2005CHROMAT_FILE: MSMg01no531_k06.g1 PHD_FILE: MSMg01no531_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,066,739 - 61,067,247)(60,906,471 - 60,906,946)
sequence
CCTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATGACCTTTCGCAGGTTGCTATATTCTATTCATTATG
AAGAATTATGGATTATGAACTGTCTCATAGAACTGTTTCAAAGAATGAGT
AAAACTGCTAACAGAAATAAAAAATATATGTAGATTGTAGTCCTTACTAT
TTAGAAAAAAGTTGCCTGTCTGTGTACCAGATGCTGTCTGGAAAGATCTG
TGGAGCTCTGGCCTTACTGGAGGGGCCAAATACTCCAGAGGTGGTGTAGC
TCAGCAGCTAGGAGCCAAGGTCAGGGCCACTATCTGGAAAGTGACCTCGG
TAGGCTCTAGTAGCTTCCAGCAGCAAAAGCTTTGGGAGAGAATATCTCTT
CCCCAAAATAGCTCTATACAACAGATGCTCTGAGATGGCCTTTGATTAAA
TAACTTCTGTGTTCTTTATTCCTTGTGGACAGATATATATATTGGGGTGG
GCTGAGCTCTAAGAGCAGATGTTTTCAGTTGGCATGGTCTGAGATGTTAG
GGATGCCTCATCTGCATGTGGAGTGGCTTTGAGCACTGCCCCTATGTGAC
TGACTGTCCTCTCCATGGGGTGTCATGGTCATGTGTTCCAGGACAGGAAC
CTGCTTGGGAGTAGATGAAACTCCTACTGTTCTCAGGTATGGGGGTACAG
GGTCTCTGAATCCACAACTTACCAAGTTTTTGTCTGGTAACATGGTTCCA
CTTGCCC

CCTTTTTTCTATTAATTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGCATTTGAGAC
ATTCTTTGAAAAAAATTAAACTTCGAGACTACCTTTCTTTTCATTAAATG
GTTATTGTACCCTCATCTTTCTCCCTCTCACCCTCTTCAAGAACTTGGGT
TATGTAATCATTTAAAGTGTTCATATTTGCATTTATAGTCTTTAAGTCTG
CTGCTCTGCGTCGGATGTTCTTAAGGGTCACGTAGTTCATTGGACTTACT
TTGTTAGTGTCCAGAATGCTGGTACACATTCTTTTGGGGGTTGACTGCAC
AGGCTGCATTGCTTTTTAATTAACTATTTATCAATTTTAGTTACTGCTTC
TAATTCCATCCATGGTATCTCTGACTCATTTAACTTTTTCAGCTTCTTGG
AGTTTTGCTGCATGTATTTTTTTAAGTGTTAATCTGGTTTTCCTCATTTG
ACTTTGTGTTCAACCCTCACTACTGTCATTCTTACATCCAGGCTCTGTTG
TTGGACTCTGGAGAACCCTCTGTTGACTTTCATTTTGACATTTCTGCCAT
GTTCCTCATCATATTGAATTGTCTACGTGTATCTAACTATTTCTTAACAA
GAATCTGGTTTCTAATTCATTCTGAAAGTGTTCTCTCTTTGCAGACACAC
CTTCCTGATCTGCAATTTGAAAACTTCTCCCAAGCAAAAACCAGGGTTTT
ATATTATTCTCGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_k06.b1 MSMg01no531_k06.b1 CHROMAT_FILE:
MSMg01no531_k06.b1 PHD_FILE: MSMg01no531_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:20 2005
         (651 letters)



>mm_chr6_61066739_61067789
          Length = 1051

 Score =  977 bits (505), Expect = 0.0
 Identities = 508/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgacctttcgcaggttgctatattctattcattatgaagaattatggattat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattccatgacctttggcaggttgctatattctattcattatgaagaattatggattat 450

                                                                       
Query: 65  gaactgtctcatagaactgtttcaaagaatgagtaaaactgctaacagaaataaaaaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaactgtctcatagaactgtttcaaagaatgagtaaaactgctaacagaaataaaaaata 390

                                                                       
Query: 125 tatgtagattgtagtccttactatttagaaaaaagttgcctgtctgtgtaccagatgctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tatgtagattgtagtccttactatttagaaaaaagttgcctgtctgtgtaccagatgctg 330

                                                                       
Query: 185 tctggaaagatctgtggagctctggccttactggaggggccaaatactccagaggtggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tctggaaagatctgtggagctctggccttactggaggggccaaatactccagaggtggtg 270

                                                                       
Query: 245 tagctcagcagctaggagccaaggtcagggccactatctggaaagtgacctcggtaggct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tagctcagcagctaggagccaaggtcagggccactatctggaaagtgacctcggtaggct 210

                                                                       
Query: 305 ctagtagcttccagcagcaaaagctttgggagagaatatctcttccccaaaatagctcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ctagtagcttccagcagcaaaagctttgggagagaatatctcttccccaaaatagctcta 150

                                                                       
Query: 365 tacaacagatgctctgagatggcctttgattaaataacttctgtgttctttattccttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tacaacagatgctctgagatggcctttgattaaataacttctgtgttctttattccttgt 90

                                                                       
Query: 425 ggacagatatatatattggggtgggctgagctctaagagcagatgttttcagttggcatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ggacagatatatatattggggtgggctgagctctaagagcagatgttttcagttggcatg 30

                                        
Query: 485 gtctgagatgttagggatgcctcatctgc 513
           |||||||||||||||||||||||||||||
Sbjct: 29  gtctgagatgttagggatgcctcatctgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no531_k06.g1 MSMg01no531_k06.g1 CHROMAT_FILE:
MSMg01no531_k06.g1 PHD_FILE: MSMg01no531_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:20 2005
         (476 letters)



>mm_chr6_60906271_60907146
          Length = 876

 Score =  913 bits (472), Expect = 0.0
 Identities = 475/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgagcatttgagacattctttgaaaaaaattaaacttcgagactacctttcttttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgagcatttgagacattctttgaaaaaaattaaacttcgagactacctttcttttcat 260

                                                                       
Query: 61  taaatggttattgtaccctcatctttctccctctcaccctcttcaagaacttgggttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatggttattgtaccctcatctttctccctctcaccctcttcaagaacttgggttatg 320

                                                                       
Query: 121 taatcatttaaagtgttcatatttgcatttatagtctttaagtctgctgctctgcgtcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatcatttaaagtgttcatatttgcatttatagtctttaagtctgctgctctgcgtcgg 380

                                                                       
Query: 181 atgttcttaagggtcacgtagttcattggacttactttgttagtgtccagaatgctggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttcttaagggtcacgtagttcattggacttactttgttagtgtccagaatgctggta 440

                                                                       
Query: 241 cacattcttttgggggttgactgcacaggctgcattgctttttaattaactatttatcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacattcttttgggggttgactgcacaggctgcattgctttttaattaactatttatcaa 500

                                                                       
Query: 301 ttttagttactgcttctaattccatccatggtatctctgactcatttaactttttcagct 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttatttactgcttctaattccatccatggtatctctgactcatttaactttttcagct 560

                                                                       
Query: 361 tcttggagttttgctgcatgtatttttttaagtgttaatctggttttcctcatttgactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttggagttttgctgcatgtatttttttaagtgttaatctggttttcctcatttgactt 620

                                                                   
Query: 421 tgtgttcaaccctcactactgtcattcttacatccaggctctgttgttggactctg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgttcaaccctcactactgtcattcttacatccaggctctgttgttggactctg 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |