GGAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
GCGGAATTCTCTGGTTGTCTCCCTTAGGGACATGACATTTTATTTCAATC
TTTCTCTGCTGCGTTTTTTTTAATAGATTGAAAACAATCCCCTACTTATC
TGTACTCTGTCTTTGCCCTGTGTTCAAAATCGTTGCAAATGAGACAATTT
GGATTGAATGACATTTGTGACCTCAAATTAGTATAGGTAAGTATATTAAT
TTTTGTTTTAAAACATATATGCCATAAAAAATTAGTATAGTTTTACATGT
AAAAATGTAAGTATGAATTTCTAGATATTGATTCAAAACAAAGTAATCTA
GCAACTTTTGTGAAAAGACTTTAACTTTGGTTTTTTTTACTGAGACATCA
TTGTTTTATAGATAATGATCACTAGAAAGCATGTTGGCACTCTAAATTGC
TGGATAAAGAAGTTTGGAACACTGGAAATATAAGAAAATATTAACATGGA
AGGGAAGGGACTTTTTGCAGAGTCCCAGTTTTAGACAACGACCTATGAGA
AACCAATGACTGCTGGGACTTGNGGAATTAGTCTTTCCTGGGTATGAGGA
TGTTATTTCATTGAACAATGCAGAGTGAAATACATTGAAATGATAACCAC
CCCCCCCACACACACATACACACACATACACATACACACATACACACACA
CACATACATACACACACACACACACACACACACACAAACCCAGATC

NNGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGTCTTT
TATCATGAATGGGTGTTGGATCTTGTCGAATGCTTTTTCTGTATCTAATG
AGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACA
TTGATAGATTTCCGTATATTAAACCATTCCTGCATGCCTGGAATAAAACC
TACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTCG
CGAGAATTTTATTGAGGATTTTGGCATCTATATTCATAAATAAATTTGGT
CTGAAGTTCTCTATCATTGTTGGATTTTTCTGTGGTTTAGGTATCAGAGT
AATTGTGGCTTCATAGAATGAGTTGGGTAAGTACCTTCTACTTCTATTTT
GTGAAATAGTTTGTGAAGAACTGGAATTAGATCTTCTTTGAAGGTCTGGT
AGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGGGCGA
CTATTAGTGACTGCTTGTATTTCTTTAGGGGATATGGGACTGTTTAGATA
GTTAACTTGATCCTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAATT
TGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGTCCTTTGTAG
AAGGATCTGATGGTGTTTTAAAGAATCTGATGGTGTTTTGGATTTCT

Query= MSMg01no532_b01.b1 MSMg01no532_b01.b1 CHROMAT_FILE:
MSMg01no532_b01.b1 PHD_FILE: MSMg01no532_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:53 2005
         (602 letters)



>mm_chr6_16003375_16004380
          Length = 1006

 Score = 1089 bits (563), Expect = 0.0
 Identities = 593/604 (98%), Gaps = 6/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggacatgacattttatttcaatctttctctgctgcgttttttttaatagattgaaaacaa 60
           ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 201 ggacatgacattttatttcaatctttctctgctgcattttttt-aatagattgaaaacaa 259

                                                                       
Query: 61  tcccctacttatctgtactctgtctttgccctgtgttcaaaatcgttgcaaatgagacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcccctacttatctgtactctgtctttgccctgtgttcaaaatcgttgcaaatgagacaa 319

                                                                       
Query: 121 tttggattgaatgacatttgtgacctcaaattagtataggtaagtatattaatttttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttggattgaatgacatttgtgacctcaaattagtataggtaagtatattaatttttgtt 379

                                                                       
Query: 181 ttaaaacatatatgccataaaaaattagtatagttttacatgtaaaaatgtaagtatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttaaaacatatatgccataaaaaattagtatagttttacatgtaaaaatgtaagtatgaa 439

                                                                       
Query: 241 tttctagatattgattcaaaacaaagtaatctagcaacttttgtgaaaagactttaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttctagatattgattcaaaacaaagtaatctagcaacttttgtgaaaagactttaactt 499

                                                                       
Query: 301 tggtttttttt-actgagacatcattgttttatagataatgatcactagaaagcatgttg 359
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggtttttttttactgagacatcattgttttatagataatgatcactagaaagcatgttg 559

                                                                       
Query: 360 gcactctaaattgctggataaagaagtttggaacactggaaatataagaaaatattaaca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcactctaaattgctggataaagaagtttggaacactggaaatataagaaaatattaaca 619

                                                                       
Query: 420 tggaagggaagggactttttgcagagtcccagttttagacaacgacctatgagaaaccaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tggaagggaagggactttttgcagagtcccagttttagacaacgacctatgagaaaccaa 679

                                                                       
Query: 480 tgactgctgggacttgnggaattagtctttcctgggtatgaggatgttatttcattgaac 539
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgactgctgggacttggggaattagtctttcctgggtatgaggatgttatttcattgaac 739

                                                                       
Query: 540 aatgcagagtgaaatacattgaaatgataaccaccccc--c-c-cacacacacatacaca 595
           |||||||| || | ||||||||||||||||||||||||  | | ||||||||||||||||
Sbjct: 740 aatgcagaatggactacattgaaatgataaccaccccctacacacacacacacatacaca 799

               
Query: 596 caca 599
           ||||
Sbjct: 800 caca 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1006
Length adjustment: 10
Effective length of query: 592
Effective length of database: 996
Effective search space:   589632
Effective search space used:   589632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)