Query= MSMg01no532_f10.b1 MSMg01no532_f10.b1 CHROMAT_FILE:
MSMg01no532_f10.b1 PHD_FILE: MSMg01no532_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:14 2005
(596 letters)
>mm_chr6_61552057_61553053
Length = 997
Score = 1054 bits (545), Expect = 0.0
Identities = 581/593 (97%), Gaps = 1/593 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctcatcattcatcccaatggacccaaacaggcttggtaaatactgtgatttga 63
|||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 204 ggaattcctcgtcatttaccccaatggacccaaacaggcttggtaaatactgagatttga 263
Query: 64 ggtatgggtagacctgcctcaggatgactgtttcttctgttttcaaatctagtatgttgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtatgggtagacctgcctcaggatgactgtttcttctgttttcaaatctagtatgttgc 323
Query: 124 agaa-atttctggtgttaactctctttcaattgataacagacaataccaggcaaacccca 182
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 agaacatttctggtgttaactctctttcaattgataaaagacaataccaggcaaacccca 383
Query: 183 ttacatctaacggaaattatgttatataattgaatcttgcagtgtctccatggaaaatac 242
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttacttctaacggaaattatgttatataattgaatcttgcagtgtctccatggaaaatac 443
Query: 243 ttcaagatcctgtacaacagtaatgctcttagccatggtctttcttcaaggctggtcata 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcaagatcctgtacaacagtaatgctcttagccatggtctttcttcaaggctggtcata 503
Query: 303 atgtagtttccactctttaagacaaagtactcagaactgatggaagacaaagtgcaatta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgtagtttccactctttaagacaaagtactcagaactgatggaagacaaagtgcaatta 563
Query: 363 tttctccttgtctaacatttatgaggacatttattcaccaaagtacttcataattctttc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttctccttgtctaacatttatgaggacatttattcaccaaagtacttcataattctttc 623
Query: 423 cttgatgtctactctatctaatttacagttcttaggaacacaggttttgaatccaacagg 482
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttgatgtccactctatctaatttacagttcttaggaacacaggttttgaatccaacagg 683
Query: 483 ttacaaacaagatgctattaccccagacttcaaggaaataatatacttcaaggaaataag 542
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttacaaacaagatgccattaccccagacttcaaggaaataatatacttcaaggaaataag 743
Query: 543 aactagatgttttcctgaaatatatcggctaagggcctcatataatcatgcag 595
||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct: 744 aactagatgttttcctgaaatatataggctaagagccttatataatcatgcag 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 997
Length adjustment: 10
Effective length of query: 586
Effective length of database: 987
Effective search space: 578382
Effective search space used: 578382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_f10.g1 MSMg01no532_f10.g1 CHROMAT_FILE:
MSMg01no532_f10.g1 PHD_FILE: MSMg01no532_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:14 2005
(606 letters)
>mm_chr6_61708123_61709128
Length = 1006
Score = 1133 bits (586), Expect = 0.0
Identities = 601/606 (99%)
Strand = Plus / Minus
Query: 1 tgctctgtgattgtaccttctagctatgacaaggaagctacaactatgcagtctcaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tgctctgtgattgtaccttctagctatgacaaggaagctacaactatgcagtctcaaaaa 801
Query: 61 cattgatgcataagcaagacctgaacaatcctatcagttgacattccaatgcagagagag 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cattgatgcataaacaagacctgaacaatcctatcagttgacattccaatgcagagagag 741
Query: 121 ggaatctcactggtcctccctatgccagataaatatctgcaagcaattaactactaagag 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 740 ggaatctcactggtcctccctatgctagataaatatctgcaagcaattaactactaagag 681
Query: 181 aggaagagtcagtcttcccaaaggatgtggcccattattggttttccaacattcagtggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggaagagtcagtcttcccaaaggatgtggcccattattggttttccaacattcagtggt 621
Query: 241 caactttagaagcatgtaggcaacaccgaaagaacgctcctgttatgtttatatgactat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caactttagaagcatgtaggcaacaccgaaagaacgctcctgttatgtttatatgactat 561
Query: 301 ttgtatataaagaacaattgttaaaagagtggaagccattaatctgaggggtaagggggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgtatataaagaacaattgttaaaagagtggaagccattaatctgaggggtaagggggt 501
Query: 361 ccagacttgaaaaagacaggagacatggaagagagaaatgtgttatatattttgatttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccagacttgaaaaagacaggagacatggaagagagaaatgtgttatatattttgatttat 441
Query: 421 taaattgattattattttgtcaccaacaccctcctcaaccttctagccataacactattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taaattgattattattttgtcaccaacaccctcctcaaccttctagccataacactattg 381
Query: 481 tgttcaatggacaatatccaaaccaagaaaagatataacagcaacagaaggaaaagaata 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 380 tgttcaatggacaatatccaaaccaagaaaagaaataacagcaacagaaggaaaaaaata 321
Query: 541 gaggaaggatgagcattaagtcacaaaatccttgtcttttctcatgactatctacaaacc 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 320 gaggaaggatgagcattaagtcacaaaatccttgtctcttctcatgactatctacaaacc 261
Query: 601 atccaa 606
||||||
Sbjct: 260 atccaa 255
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
