BAC Information

Click to search

BAC

Clone NameMSMg01-532F20
Chromosome6 (Build37)
Map Location 34,693,771 - 34,805,361
singlet/doubletdoublet
Overlap geneCald1, Agbl3
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184
Downstream geneTmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532F20.T7 (MSMg01no532_f20.b1)MSMg01-532F20.TJ (MSMg01no532_f20.g1)
ACCAG600542AG600543
length741755
length of high quality
(start - end)		657 (53 - 709)673 (83 - 755)
definitionCHROMAT_FILE: MSMg01no532_f20.b1 PHD_FILE: MSMg01no532_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:16 2005CHROMAT_FILE: MSMg01no532_f20.g1 PHD_FILE: MSMg01no532_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,805,043 - 34,805,361)(34,693,771 - 34,694,443)
sequence
NGGGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAACTTGTTTCATGCTAATACGTGTGGTTATGTGCCACT
ATATATTGTTTAGTCTTCTGCTCATGACTTGTTTTTCTTTTCCTGGAAAT
TTCTTTTAAATTATATGTATGCCTGTGTATTTGTGTAGGGTTGTATGCGT
GTGAGTACAGGTGCCTTTGGAGGCCAGAAGAGAGTGGTAGAGTCCCTGGG
ACTGGGATTACAGGTGGCTGTAACCTGTCTGATGTGAGTGCTGGGGACAC
ACAGGTCCTTTGCAAGAGCAGTCCATGCTGTTAACTACTGAGCCATCTCA
GTAGCCCTGAAATGTTTTTTTTTTTTGACTGTTGAATTTGAGGGTTCTCT
TCCTCCCCCTCTCTCTGTGTGCATACATGTACATGTGTGTGCATGTGTAT
ATGTCTTAGGGTTTTACTGCTGTGAACAGATACCATGACCAAGACAGCTT
TTATAAGGACAACATTTAATTGGGGCTGGCTTACAGATTCAGAGGTTCAG
TCCATTATCGTCAAGGCAGGAGCATGGCAGCATCCAGGCAGGCATGGTGC
AGGAGTAGCTGAGAGTTCTATATCTTCATCTGAAGGCCACTAGGAGAAGA
CTGGCTTCTGGGCAGCTAGGATGAGGGTCTAAAAGCCCATGCCCATAATG
ACACACTTCCTCCAACAAGGCCACACCCACTCGAACAAGGG

NNNNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTCTGGTGAGTGCTTT
GGAATTTGCAGTACCTTTTTAAAGTGCTAGAACTCAGTTGGTCCAAGCGT
CCTGTGCACAGACCTTTGCCATTGACCTCCCAGTTCCCCATATTCCTGTG
GCCATGTAATCCGCATGCGGCTAATTCACAGCGACAATGTCCTGCAGCAA
CAGCAGAGGCCCAAAAGGCTTAAAATCTAGGCTTTCTTCTATGATATTTT
GTTGTTAACTATATGATGTGTTTTTCCAAATCCAAGTGAACTTGAACATC
AGAGGAGCCAAGTTTGGTATGAACCATGAAATTTGATGGAGTTTCTAAAC
ATTTTAAGACATAGGCTTCCAGCTCCAGTCGCCGTTCTGGTATCACATGA
CTGGTAATTCCAGCCAGGAGGGGCCGACGCCCTTGGTCTGGGCAGTGTCC
AGCACCCTGGAAGAGTGATTAAGATGATGGACATGCTACAGTTTGGATTT
TCCCTTTTTTTTTCTTTTAAAAATAAACATTGGGTTTAGCCAGCCTTTAC
CCATTGGAGAAAAGTAGAAAAAGCTCTTTATTCTTGGAAGTCTGTACAAA
GGAGTTATATTGTCTAGATTAGTTATGGTAATGTTGTTGCTATGAGAATT
TTCATATTTTAACACGGTATGCTAGTGCACTGTGGATATTTTTGTGTACT
GGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_f20.b1 MSMg01no532_f20.b1 CHROMAT_FILE:
MSMg01no532_f20.b1 PHD_FILE: MSMg01no532_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:16 2005
         (657 letters)



>mm_chr6_34805041_34806097
          Length = 1057

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacttgtttcatgctaatacgtgtggttatgtgccactatatattgtttagtct 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattcaacttgcatcatgctaatacgtgtggttatgtgccactatatattgtttagtct 262

                                                                       
Query: 65  tctgctcatgacttgtttttcttttcctggaaatttcttttaaattatatgtatgcctgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgctcatgacttgtttttcttttcctggaaatttcttttaaattatatgtatgcctgt 202

                                                                       
Query: 125 gtatttgtgtagggttgtatgcgtgtgagtacaggtgcctttggaggccagaagagagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatttgtgtagggttgtatgcgtgtgagtacaggtgcctttggaggccagaagagagtg 142

                                                                       
Query: 185 gtagagtccctgggactgggattacaggtggctgtaacctgtctgatgtgagtgctgggg 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gtagattccctgggactgggattacaggtggctgtaacctgtctgatgtgagtgctgggg 82

                                                                       
Query: 245 acacacaggtcctttgcaagagcagtccatgctgttaactactgagccatctcagtagcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  acacacaggtcctttgcaagagcagtccatgctgttaactactgagccatctcagtagcc 22

                              
Query: 305 ctgaaatgttttttttttt 323
           |||||||||||||||||||
Sbjct: 21  ctgaaatgttttttttttt 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_f20.g1 MSMg01no532_f20.g1 CHROMAT_FILE:
MSMg01no532_f20.g1 PHD_FILE: MSMg01no532_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:16 2005
         (673 letters)



>mm_chr6_34693571_34694643
          Length = 1073

 Score = 1294 bits (669), Expect = 0.0
 Identities = 672/673 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtctggtgagtgctttggaatttgcagtacctttttaaagtgctagaactcagttggt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtctggtgagcgctttggaatttgcagtacctttttaaagtgctagaactcagttggt 260

                                                                       
Query: 61  ccaagcgtcctgtgcacagacctttgccattgacctcccagttccccatattcctgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagcgtcctgtgcacagacctttgccattgacctcccagttccccatattcctgtggc 320

                                                                       
Query: 121 catgtaatccgcatgcggctaattcacagcgacaatgtcctgcagcaacagcagaggccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtaatccgcatgcggctaattcacagcgacaatgtcctgcagcaacagcagaggccc 380

                                                                       
Query: 181 aaaaggcttaaaatctaggctttcttctatgatattttgttgttaactatatgatgtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaggcttaaaatctaggctttcttctatgatattttgttgttaactatatgatgtgtt 440

                                                                       
Query: 241 tttccaaatccaagtgaacttgaacatcagaggagccaagtttggtatgaaccatgaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccaaatccaagtgaacttgaacatcagaggagccaagtttggtatgaaccatgaaat 500

                                                                       
Query: 301 ttgatggagtttctaaacattttaagacataggcttccagctccagtcgccgttctggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgatggagtttctaaacattttaagacataggcttccagctccagtcgccgttctggta 560

                                                                       
Query: 361 tcacatgactggtaattccagccaggaggggccgacgcccttggtctgggcagtgtccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacatgactggtaattccagccaggaggggccgacgcccttggtctgggcagtgtccag 620

                                                                       
Query: 421 caccctggaagagtgattaagatgatggacatgctacagtttggattttccctttttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caccctggaagagtgattaagatgatggacatgctacagtttggattttccctttttttt 680

                                                                       
Query: 481 tcttttaaaaataaacattgggtttagccagcctttacccattggagaaaagtagaaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttttaaaaataaacattgggtttagccagcctttacccattggagaaaagtagaaaaa 740

                                                                       
Query: 541 gctctttattcttggaagtctgtacaaaggagttatattgtctagattagttatggtaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctctttattcttggaagtctgtacaaaggagttatattgtctagattagttatggtaat 800

                                                                       
Query: 601 gttgttgctatgagaattttcatattttaacacggtatgctagtgcactgtggatatttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttgttgctatgagaattttcatattttaacacggtatgctagtgcactgtggatatttt 860

                        
Query: 661 tgtgtactggata 673
           |||||||||||||
Sbjct: 861 tgtgtactggata 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |