Query= MSMg01no532_h10.b1 MSMg01no532_h10.b1 CHROMAT_FILE:
MSMg01no532_h10.b1 PHD_FILE: MSMg01no532_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:23 2005
(686 letters)
>mm_chr6_38823913_38825002
Length = 1090
Score = 1282 bits (663), Expect = 0.0
Identities = 679/687 (98%), Gaps = 6/687 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatgccttgtctctttctaaaatgctcacccggagtgtccagcagagggagtct 64
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgccaagt-tctttctaaaatgctcacccggagtgtccagcagagggagtct 263
Query: 65 caaggaggtacttaataaagagaaaactgtttcattttaacactctagacagtgggagct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaggaggtacttaataaagagaaaactgtttcattttaacactctagacagtgggagct 323
Query: 125 ttgactgcagcccccctcccctagacacagatgaacaatgaatgcccgacatgggttctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgactgcagcccccctcccctagacacagatgaacaatgaatgcccgacatgggttctc 383
Query: 185 ctacatgttcacgtccccactggcatgtttctagtctacgtggtggagtgatccgaaatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctacatgttcacgtccccactggcatgtttctagtctacgtggtggagtgatccgaaatt 443
Query: 245 ttgttttgttgtgtggaacggttaaatagaccttgtgttcttcggaatcaaagaggaaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgttttgttgtgtggaacggttaaatagaccttgtgttcttcggaatcaaagaggaaag 503
Query: 305 cccctggaataacatttctctgttgctttctaaacagcccctttgtttctaagagactct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccctggaataacatttctctgttgctttctaaacagcccctttgtttctaagagactct 563
Query: 365 ggaaaaaatatttacagtccataggttatttacagccttgttattcagagcctgaatggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaaaaaatatttacagtccataggttatttacagccttgttattcagagcctgaatggt 623
Query: 425 aagagagtccatgcagaaacctaattcatttagagccctggtactaataacagattttct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagagagtccatgcagaaacctaattcatttagagccctggtactaataacagattttct 683
Query: 485 tttcagataagtttttttttttt-----aatcagcctctcctaacagagataaaactatt 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 tttcagataagttttttttttttttttaaatcagcctctcctaacagagataaaactatt 743
Query: 540 aatgagatccctgtttcactcggcccaacagttccctgggtttataggattacaatctcc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aatgagatccctgtttcactcggcccaacagttccctgggtttataggattacaatctcc 803
Query: 600 cctagcccctcctcttggttcctggcaaacccgtttccctctcatttgcgatttcataca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cctagcccctcctcttggttcctggcaaacccgtttccctctcatttgcgatttcataca 863
Query: 660 cagaatatctgaacaaaaccgaaagaa 686
|||||||||||||||||||||||||||
Sbjct: 864 cagaatatctgaacaaaaccgaaagaa 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1090
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1080
Effective search space: 730080
Effective search space used: 730080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_h10.g1 MSMg01no532_h10.g1 CHROMAT_FILE:
MSMg01no532_h10.g1 PHD_FILE: MSMg01no532_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:23 2005
(584 letters)
>mm_chr6_38984285_38985268
Length = 984
Score = 1106 bits (572), Expect = 0.0
Identities = 581/584 (99%)
Strand = Plus / Minus
Query: 1 tgtgagacccggacaaggggaagaaccctggctgactgggagcctcattccctgttgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgtgagacccggacaaggggaagaaccctggctgactgggagcctcattccctgttgcag 725
Query: 61 ctccatcctacttcctgtgtgaccctgtatgtgattctggctggaagactctccccaacc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 724 ctccatcctacttcctgtgtgaccctgtatgtgattctggctggaagactctccccaatc 665
Query: 121 cccgactccccatagtgaggacaaatttatgataggttatccaaatagttcccaacccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cccgactccccatagtgaggacaaatttatgataggttatccaaatagttcccaacccaa 605
Query: 181 tgttcccccgtgacaaaaggatgcatgtagttatgaaatagctgcttatggcgcagggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgttcccccgtgacaaaaggatgcatgtagttatgaaatagctgcttatggcgcagggct 545
Query: 241 attttatttttataaccgtggggtacgtttggatctttgagatcctctggatactccaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 attttatttttataaccgtggggtacgtttggatctttgagatcctctggatactccaag 485
Query: 301 gagcaaatccccaacctttctggactgaagcagcatgagctaatcagctgaagaaaccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gagcaaatccccaacctttctggactgaagcagcatgagctaatcagctgaagaaaccag 425
Query: 361 cacagagtgttctttgatccttaggagaagtaggaagaggaagatgtgttttaattagat 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 424 cacagagtgttctttgatccttaggagaggtaggaagaggaagatgtgttttaattagat 365
Query: 421 ctttataatgtgacaaagtggctgttggagagttctggggagttgattgtccttctaagt 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctttataatgtgacaaagtagctgttggagagttctggggagttgattgtccttctaagt 305
Query: 481 catgactgtgttcaaactaccctgagcagaggctgtatatctatgtcgtccagtttgtga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catgactgtgttcaaactaccctgagcagaggctgtatatctatgtcgtccagtttgtga 245
Query: 541 taaatttataactaggttctgcagagcagatttatatcaacaat 584
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taaatttataactaggttctgcagagcagatttatatcaacaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
