BAC Information

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BAC

Clone NameMSMg01-532H22
Chromosome6 (Build37)
Map Location 100,446,088 - 100,636,456
singlet/doubletdoublet
Overlap geneShq1, LOC625221
Upstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
Downstream geneBC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532H22.T7 (MSMg01no532_h22.b1)MSMg01-532H22.TJ (MSMg01no532_h22.g1)
ACCAG600640AG600641
length743751
length of high quality
(start - end)
619 (53 - 671)578 (80 - 657)
definitionCHROMAT_FILE: MSMg01no532_h22.b1 PHD_FILE: MSMg01no532_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:25 2005CHROMAT_FILE: MSMg01no532_h22.g1 PHD_FILE: MSMg01no532_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,446,088 - 100,446,702)(100,636,040 - 100,636,456)
sequence
NNNAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGGATAATCTCGGCTACAGGGAAAAACCCTATCTCAA
GGAAATGTAATAATATTATTAATAACAATCTAATTTTAATTAATTTAATA
TGACAAGACTAATACATTGTAAAGCAATGAAAGAAAATAAGAGTTTCAAG
GTGCATGCCTTGGAATCCCAGGTACACAGGAGGCTGAGGCAAAAGGAGCA
CCAGGGCTTGGAGGCCAGCCTGGGCTACATTCCAACTCAACCAAAGCCAA
AAACAAAATAAAAAGACCTGGGTTTCAGAGTCAGTGCAAGGCTAGCTAGC
TAAGGCAGCAGTGAGCCCTGTCTTAAAATAAAAAGGAGGTCTGGGACATG
GGCCAGTGATACAGCATTTGTGTCAGTTTCTAGTGATGTGACCATCTCAA
ATAAAATATATACATGTGTTATATACAGAAACTCCTCATAGGAAATGTTG
CTGGTGCTCCAACCTTACCCAGGTGGCTTCATTAGTCCTGGGTCCATGCC
CATAGCAGCCCTCAGCCAGGCTGGCCACTTTAGAAAGTGCTCCTGGGGCA
TGGTCCTGACCTGNGGCCTTTGCACCTATGTTAACAGCTGTGTAGCTTGG
TCCTCTTGTGCGACTCCTAACAGTGGGATCGGGGCCGGTCTCTGACTCTG
TGGNCTGCCCTCAGGACCCTTTCTTCTTGCTGGGGTGTCGTGG
NNNCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAGCTTGATGGCCAGCGA
GCCTGGCTTACTTGGGAAGTTCCAGGCCAATGAGAGACCCTGTCTCAAAA
CAATGCAGATGGGCTGGGTGGTGGTGGTGGTGGCCCACGCCTTTAATCCC
AGCACTGGGGAGGCAGAGGTAGGCAGATCTCTGAATTTAAAGCCAGCCTG
GTCTACAGAGTAAGTTCTAGGACAGCCAGGGTCACACAAAGAAACTCTGT
CTCCAAAACCAACCAACCAACCAACCAACCAAACAAACTAACTAACTAAC
TAACTAACTAACTAACTAACTAACTAAGCAGATAGTTTCTAAGGAATGAC
ATCCAAGGTTGTCTCTTGGCTTCTATTCACATGTGCACACATGTGCACCT
GAACACACATGAGCATTTACATAGTAATATGGGAAAATCAGAGTGGAAAA
GAGAGCAAGGAGCAAACGAGATGGGAAGAAGGCCCCAGAACTGCTTGGAC
ACTGCAATTGGCAGTAGGGTAATTGCTACCTGCATTTGTCTCACCAGGGC
CTCTTACTTGAAGGATTTGTCTTTAGTCTGGAAAAAGGTGACTCATGTGG
ACGATTCTGGGAAAGCAATACCAAACCAGCCTGTTACACTATTTTAACTT
TATAGAGCAGTGCCTGAGATGAGTTTACAATCCATGTAATTCACAGAAAT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_h22.b1 MSMg01no532_h22.b1 CHROMAT_FILE:
MSMg01no532_h22.b1 PHD_FILE: MSMg01no532_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:25 2005
         (619 letters)



>mm_chr6_100445884_100446902
          Length = 1019

 Score = 1129 bits (584), Expect = 0.0
 Identities = 607/615 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggataatctcggctacagggaaaaaccctatctcaaggaaatgtaataatat 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggataatcagggctacagggaaaaaccctatctcaaggaaatgtaataatat 264

                                                                       
Query: 65  tattaataacaatctaattttaattaatttaatatgacaagactaatacattgtaaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattaataacaatctaattttaattaatttaatatgacaagactaatacattgtaaagca 324

                                                                       
Query: 125 atgaaagaaaataagagtttcaaggtgcatgccttggaatcccaggtacacaggaggctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgaaagaaaataagagtttcaaggtgcatgccttggaatcccaggtacacaggaggctg 384

                                                                       
Query: 185 aggcaaaaggagcaccagggcttggaggccagcctgggctacattccaactcaaccaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggcaaaaggagcaccagggcttggaggccagcctgggctacattccaactcaaccaaag 444

                                                                       
Query: 245 ccaaaaacaaaataaaaagacctgggtttcagagtcagtgcaaggctagctagctaaggc 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaaaaacaaaataaaaaaacctgggtttcagagtcagtgcaaggctagctagctaaggc 504

                                                                       
Query: 305 agcagtgagccctgtcttaaaataaaaaggaggtctgggacatgggccagtgatacagca 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 agcagtgagccctgtcttaaaataagaaggaggtctgggacatgggccagtgatacagca 564

                                                                       
Query: 365 tttgtgtcagtttctagtgatgtgaccatctcaaataaaatatatacatgtgttatatac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttgtgtcagtttctagtgatgtgaccatctcaaataaaatatatacatgtgttatatac 624

                                                                       
Query: 425 agaaactcctcataggaaatgttgctggtgctccaaccttacccaggtggcttcattagt 484
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 agaaactcctcataggaaatgttgctggtgctccgaccttacccaggtggcttcattagt 684

                                                                       
Query: 485 cctgggtccatgcccatagcagccctcagccaggctggccactttagaaagtgctcctgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctgggtccatgcccatagcagccctcagccaggctggccactttagaaagtgctcctgg 744

                                                                       
Query: 545 ggcatggtcctgacctgnggcctttgcacctatgttaacagctgtgtagcttggtcctct 604
           ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 745 ggcatggccctgacctggggcctttgtacctatgttaacagctgtgtagcttggtcctct 804

                          
Query: 605 tgtgcgactcctaac 619
           |||||||||||||||
Sbjct: 805 tgtgcgactcctaac 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no532_h22.g1 MSMg01no532_h22.g1 CHROMAT_FILE:
MSMg01no532_h22.g1 PHD_FILE: MSMg01no532_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:26 2005
         (578 letters)



>mm_chr6_100635478_100636456
          Length = 979

 Score =  721 bits (373), Expect = 0.0
 Identities = 413/437 (94%), Gaps = 21/437 (4%)
 Strand = Plus / Minus

                                                                       
Query: 143 ggcagatctctgaatttaaagccagcctggtctacagagtaagttctaggacagccaggg 202
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 ggcagatctctaaatttaaagccagcctggtctacagagtaagttctaggacagccaggg 920

                                                                       
Query: 203 tcacacaaagaaactctgtctccaaaaccaaccaaccaaccaaccaaccaaacaaactaa 262
           |||||||||||||||||||||||||||||||||||||||| |   || ||||||||||||
Sbjct: 919 tcacacaaagaaactctgtctccaaaaccaaccaaccaacta---aa-caaacaaactaa 864

                                                                       
Query: 263 ctaactaactaactaactaactaactaactaactaagcagatagtttctaaggaatgaca 322
           ||||||||||||             |   |||||||||||||||||||||||||||||||
Sbjct: 863 ctaactaactaa-------------t---taactaagcagatagtttctaaggaatgaca 820

                                                                       
Query: 323 tccaaggttgtctcttggcttctattcacatgtgcacacatgtgcacctgaacacacatg 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tccaaggttgtctcttggcttctattcacatgtgcacacatgtgcacctgaacacacatg 760

                                                                       
Query: 383 agcatttacatagtaatatgggaaaatcagagtggaaaagagagcaaggagcaaacgaga 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 agcatttacatagtaatatgggaaaatcagagtggaaaagagagcaaggagcaaacgaga 700

                                                                       
Query: 443 tgggaagaaggccccagaactgcttggacactgcaattggcagtagggtaattgctacct 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tgggaagaaggccccagaactgcttggacactgcaattggcagtagggtaattgctacct 640

                                                                       
Query: 503 gcatttgtctcaccagggcctcttacttgaaggatttgtctttagtctgg-aaaaaggtg 561
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 639 gcatttgtctcaccagggcctcttacttgaaggatttgtctttagtctggaaaaaaggtg 580

                            
Query: 562 actcatgtggacgattc 578
           ||||||||| |||||||
Sbjct: 579 actcatgtgaacgattc 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space:   550392
Effective search space used:   550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)