Query= MSMg01no532_j08.b1 MSMg01no532_j08.b1 CHROMAT_FILE:
MSMg01no532_j08.b1 PHD_FILE: MSMg01no532_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:32 2005
(649 letters)
>mm_chr6_21559260_21560307
Length = 1048
Score = 1185 bits (613), Expect = 0.0
Identities = 637/645 (98%), Gaps = 1/645 (0%)
Strand = Plus / Minus
Query: 5 gaattcatcatattcttcattatgggtttcatttttatccctcaagagaatgcaagtccc 64
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 848 gaattcatcatattcatcattatgggtttcatttttatccctcgagagaatgcaagtccc 789
Query: 65 tgcatttcatgcattcacttttttcactgagacttaactgttatacaggagcagcgcatg 124
|| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 788 tgtatttcatgcattcacttttttcactgacacttcactgttatacaggagcagcgcatg 729
Query: 125 acacaaagtaagaacacaatgaaaatttattgaattaattcaaaaaggctgcaggagggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 acacaaagtaagaacacaatgaaaatttattgaattaattcaaaaaggctgcaggagggg 669
Query: 185 atggtatagagaatatggtaaatatgtatttaatgatgagagcctcctggggagtataca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atggtatagagaatatggtaaatatgtatttaatgatgagagcctcctggggagtataca 609
Query: 245 cataaatgagaaggcttacgtggtggctgaactatactctttatttaaggaatacatccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cataaatgagaaggcttacgtggtggctgaactatactctttatttaaggaatacatccc 549
Query: 305 ttgtacagctggtaaaattcccgggaacgttagggaaagaatgtttctccctagggacat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttgtacagctggtaaaattcccgggaacgttagggaaagaatgtttctccctagggacat 489
Query: 365 agctagttctgacctcattaatttttttatttatgactgaaatgtgccaaggggaatagc 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agctagttctgacctcattaa-ttttttatttatgactgaaatgtgccaaggggaatagc 430
Query: 425 attcttggcccattcaattacaaatcgaatctcctctcaaattttgacttagatggtgaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 attcttggcccattcaattacaaatcgaatctcctctcaaattttgacttagatggtgaa 370
Query: 485 gcaatcattagaatatgagtttccttcaggcattccacacagtttgtattctcactgcct 544
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 369 gcaatcattagaatatgagtttccttcaggcattccacacagtttttattctcactgcct 310
Query: 545 acatccagagtctaaaactgaaattctctgcaatgttcctggagcgaatgaatggctaag 604
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 309 acatccagagtctaaaactgaaattcactgcaatgttcctggagcgaatgaatggctaag 250
Query: 605 tgaatatgtaaataaacgatagcaaaaagtttaaaatggagtttc 649
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgaatatgtaaataaacgatagcaaaaagtttaaaatggagtttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1048
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1038
Effective search space: 663282
Effective search space used: 663282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_j08.g1 MSMg01no532_j08.g1 CHROMAT_FILE:
MSMg01no532_j08.g1 PHD_FILE: MSMg01no532_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:32 2005
(617 letters)
>mm_chr6_21411567_21412583
Length = 1017
Score = 1185 bits (613), Expect = 0.0
Identities = 616/617 (99%)
Strand = Plus / Plus
Query: 1 cccacctcctaatagtgccaatccctgggccaagtatattcaacccaccacacacagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccacctcctaatagtgccaatccctgggccaagtatattcaacccaccacacacagtga 260
Query: 61 gtgattgtttaacatgtttcatgcttggacaaggaagtaggcacaggacttagcctcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgattgtttaacatgtttcatgcttggacaaggaagtaggcacaggacttagcctcatt 320
Query: 121 ggtatccatgtaggatttatacacatgtgaagcaagaaaaatcagttaacaaactagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtatccatgtaggatttatacacatgtgaagcaagaaaaatcagttaacaaactagagc 380
Query: 181 acaatagacagagccacaattaatacaggaaagattattaccgcagactagtaaaaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaatagacagagccacaattaatacaggaaagattattaccgcagactagtaaaaatga 440
Query: 241 gtaggcaagactaatgacttcttgaagcaatggttagataacaggaggtagaaagatcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaggcaagactaatgacttcttgaagcaatggttagataacaggaggtagaaagatcca 500
Query: 301 acctgcttcaactttatttttaacctgaagtggttttctatacttgcagtacttccacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctgcttcaactttatttttaacctgaagtggttttctatacttgcagtacttccacaa 560
Query: 361 attactggttgtgatggactctgaagttggaagatgcatttgtgactcaaaatttcaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attactggttgtgatggactctgaagttggaagatgcatttgtgactcaaaatttcaaac 620
Query: 421 ttacttggtggtgtaatgtctaacctcttttgttacataggctgtttggtccttattagg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 ttacttggtggtgtaatgtctaacctcttttgttacataggctgtttggtccttcttagg 680
Query: 481 acaaggaggccatatgcaaaggtacttcagaagaccacatatcccaaatgaacttcaagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaggaggccatatgcaaaggtacttcagaagaccacatatcccaaatgaacttcaagt 740
Query: 541 ggtacctctactctactggcagatacatcttaacactacccatgtgctgccttaatgact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtacctctactctactggcagatacatcttaacactacccatgtgctgccttaatgact 800
Query: 601 taatctttttctctgtt 617
|||||||||||||||||
Sbjct: 801 taatctttttctctgtt 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
