BAC Information

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BAC

Clone NameMSMg01-532K02
Chromosome6 (Build37)
Map Location 24,084,168 - 24,214,270
singlet/doubletdoublet
Overlap geneSlc13a1
Upstream geneEG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148, Tas2r118, LOC100041082
Downstream geneLOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532K02.T7 (MSMg01no532_k02.b1)MSMg01-532K02.TJ (MSMg01no532_k02.g1)
ACCAG600744AG600745
length751752
length of high quality
(start - end)		625 (52 - 676)571 (83 - 653)
definitionCHROMAT_FILE: MSMg01no532_k02.b1 PHD_FILE: MSMg01no532_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:36 2005CHROMAT_FILE: MSMg01no532_k02.g1 PHD_FILE: MSMg01no532_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,084,168 - 24,084,788)(24,213,885 - 24,214,270)
sequence
GAGAGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTTGGATTCCTACTGGAGACTACAAAAAATACTGAGGC
TAAATGTATCTCATGCATTTATGCATTCTTAATTCAAAAATATATCCCAG
CATTATTGAATTGATGCCTACTGCCCAAATGACTAGACCCCACTGTGGCC
ATATCAATACATGATACCATCAATGTCCAGTCCGTGGGCGGCAGATTCAT
TGAAATAAGTCATCTGAGTGGCCTCGGCCTCTGCTTCAGCACTGATGATC
TGCTGCGCCACAGCCTCCACGATGGGCATCACCATGGCAGCAGTAGAGGT
GTTGCTAAGCCACATAGATAAGAAGGCAGTGCTGCTCATGAACCCCAACG
TCAGCCTGAAACGAGAGGGTCTTTAGTGCGCAGCTGGGCTGTGGAGCTCA
CGTAGCTCTCTACAGTCAACTATTTCAGAAGTGTTTGCAAGTTGGAAATA
ATGTACTTCAGAACACAGAAGGTCAAGTTTCTGCCCTGACGGGGGACTCC
AATTGTGTTTACACAGACAGGTAGAAATTTATTAAGATATATGCCCCTTA
AGGGTACAAAGAGAACATTCTTTTCAAAATCAGATAATAACTTAAATGTA
TACCTAACTGCAAATTGGTCCGTAGCAAAACAGCTTGAGTGTGACCCTAA
TACTTGAGTATGTTTTTTTTTTTTTTTAATGAATAAGCTACTTGTCTCTA
G

NNGGGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCTCAGATTGCATTG
TCAATGCCATGAAAAGAAAAAACCAAAGGAAAAATACAGGATCATTTTCA
TGAAAGTGCTATGAAAGGCTGAAGAAAGCGTCTAAGTAAAAGCGAAAGGC
AAACATCTATTAACCACAACGAACACTGAATTGAACAGTAAAAAGATTAA
CACGCTCATAAAACTGCTCTTACCACACATCAAAGAAACTTCTCTTCTCA
GCAAGCAGAGACTATTGCAGAGAACCACATGGTTAAATGCAGAGAACAAG
GGATGGTGTATTGTGCAGAGTCCTAATGGATACATCTATAACACAGTTGT
TCCTCCTAGGGCTCAGGGTCCATCACAAGCAGGATTGTAAAAGACAGAGG
GGCAGGAAGTTTGCTGTGAGGCTATGCCTCCTAGGAAAATCAAACAGGCT
ATGAAATCTCCTCACCATGATTTCCTAAACTAGATCTGAACAATTAGAAC
ATACACATGCTAACAAGAAAGCTCACAGGAGTGCCTCAACCCTAGACAAA
GAACTAAGGGCAACTGGGGAAGTCAGACAGCAGGAGAAATGGTGTTCCCC
AAAGAAGAGCCTCCCCATTGGTTATTCCATAGTTAGCCATAGCGTATTTA
CATGCTGGTATCATTTACAGACTGTGTAGGCTGTATTTATATATTTAGGT
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_k02.b1 MSMg01no532_k02.b1 CHROMAT_FILE:
MSMg01no532_k02.b1 PHD_FILE: MSMg01no532_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:36 2005
         (625 letters)



>mm_chr6_24083964_24084988
          Length = 1025

 Score = 1139 bits (589), Expect = 0.0
 Identities = 613/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttggattcctactggagactacaaaaaatactgaggctaaatgtatctcatg 64
           ||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcatttggatagatactggagactacaaaaaatagtgaggctaaatgtatctcatg 264

                                                                       
Query: 65  catttatgcattcttaattcaaaaatatatcccagcattattgaattgatgcctactgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catttatgcattcttaattcaaaaatatatcccagcattattgaattgatgcctactgcc 324

                                                                       
Query: 125 caaatgactagaccccactgtggccatatcaatacatgataccatcaatgtccagtccgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaatgactagaccccactgtggccatatcaatacatgataccatcaatgtccagtccgt 384

                                                                       
Query: 185 gggcggcagattcattgaaataagtcatctgagtggcctcggcctctgcttcagcactga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggcggcagattcattgaaataagtcatctgagtggcctcggcctctgcttcagcactga 444

                                                                       
Query: 245 tgatctgctgcgccacagcctccacgatgggcatcaccatggcagcagtagaggtgttgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgatctgctgcgccacagcctccacgatgggcatcaccatggcagcagtagaggtgttgc 504

                                                                       
Query: 305 taagccacatagataagaaggcagtgctgctcatgaaccccaacgtcagcctgaaacgag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taagccacatagataagaaggcagtgctgctcatgaaccccaacgtcagcctgaaacgag 564

                                                                       
Query: 365 agggtctttagtgcgcagctgggctgtggagctcacgtagctctctacagtcaactattt 424
           ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 agggtctttagtgcggagctgggctgtggagctcatgtagctctctacagtcaactattt 624

                                                                       
Query: 425 cagaagtgtttgcaagttggaaataatgtacttcagaacacagaaggtcaagtttctgcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagaagtgtttgcaagttggaaataatgtacttcagaacacagaaggtcaagtttctgcc 684

                                                                       
Query: 485 ctgacgggggactccaattgtgtttacacagacaggtagaaatttattaagatatatgcc 544
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgacgggggactccaagtgtgtttacacagacaggtagaaatttattaagatatatgcc 744

                                                                       
Query: 545 ccttaagggtacaaagagaacattcttttcaaaatcagataataacttaaatgtatacct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccttaagggtacaaagagaacattcttttcaaaatcagataataacttaaatgtatacct 804

                                
Query: 605 aactgcaaattggtccgtagc 625
           ||||||||||||||| |||||
Sbjct: 805 aactgcaaattggtctgtagc 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_k02.g1 MSMg01no532_k02.g1 CHROMAT_FILE:
MSMg01no532_k02.g1 PHD_FILE: MSMg01no532_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:36 2005
         (571 letters)



>mm_chr6_24213885_24214855
          Length = 971

 Score =  731 bits (378), Expect = 0.0
 Identities = 384/386 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctcagattgcattgtcaatgccatgaaaagaaaaaaccaaaggaaaaatacaggat 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 386 aattctcagattgcattgtcaatgccacgaaaagaaaaaaccaaaggaaaaatacaggat 327

                                                                       
Query: 61  cattttcatgaaagtgctatgaaaggctgaagaaagcgtctaagtaaaagcgaaaggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cattttcatgaaagtgctatgaaaggctgaagaaagcgtctaagtaaaagcgaaaggcaa 267

                                                                       
Query: 121 acatctattaaccacaacgaacactgaattgaacagtaaaaagattaacacgctcataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acatctattaaccacaacgaacactgaattgaacagtaaaaagattaacacgctcataaa 207

                                                                       
Query: 181 actgctcttaccacacatcaaagaaacttctcttctcagcaagcagagactattgcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 actgctcttaccacacatcaaagaaacttctcttctcagcaagcagagactattgcagag 147

                                                                       
Query: 241 aaccacatggttaaatgcagagaacaagggatggtgtattgtgcagagtcctaatggata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 146 aaccacatggttaaatgcagagaacaagggatggtgtattgtgcagagtcccaatggata 87

                                                                       
Query: 301 catctataacacagttgttcctcctagggctcagggtccatcacaagcaggattgtaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  catctataacacagttgttcctcctagggctcagggtccatcacaagcaggattgtaaaa 27

                                     
Query: 361 gacagaggggcaggaagtttgctgtg 386
           ||||||||||||||||||||||||||
Sbjct: 26  gacagaggggcaggaagtttgctgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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