NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTTGGCGCCACAGACTCATCTGTTTGAATGCTAGTGCCA
TAGGCACTATTAGGAGGCACTATTGTTGGAGTAGGTGTGGACTTGTTGAG
GGAATTTTGTCACCAGTGGCTTTGAGGTCTCATATATAAGCTCAAGCTAA
GCTCAGTGTAGAATCAAAAGGAGGAATCCATTTTCTTCAGGAATAAGTCC
CTGATATGTTATCCAAACTCAAATGGTCTGCCCTAAACATACAAGCAACA
ATGAAGGAACTCAACAGGATCTATATCTACATCTACATCTACATCTACGT
AATTAAAGAAAAAGAAGTCATGAATTTGAGGAGCTAGGGGGCACAAGAGG
AATTGGAAGGGAGAAAGGGGCAGAGATGATATAAAGAGCACTCATTTATG
AAATTATCAAAAGATACAAAAATGTCTGTAATAGGTTCTCCTCTAAGGTC
CGTGACACACTGGCCCCAAGGTACTTGGCTGGGTTTCCAGGACTCGGCAT
TATGTCCTTCCTGTTGGGCTGTACATAAGTCTACTTAGACAGCTGTTGGT
TACTGCCAATATATGACTATTATTTCACTCTTAGGTATATCATTGTGGTT
CATAGGCATCACACTTGGGTAGGACTGTTGGCTGATTCCTTCCCTTCTCA
TAGCGAGTACTATGAAAGTCTATCCTCGGGATGTAAGCTTTTGCATCAAA
TTCN

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACTTGTTCTTAGCTCGCAA
TTTATAGCTTGGAAAAAAATTGAACAAATAAGAAAGGTCAGCTTAGTTTT
TAAAAACATACTAAAAATAGATGTTAAGAATGCAAGAAAATGAAAGGAAA
ATTTATGTGTATATACTTTAACCAAGCTCCCAACTTTACAACCCCCAAGC
CCCCCCCCCCACACACACACATCTTTATTTTTTTAAAGTGAAAGACAAAC
TTTGTAAGATGAAGGAAAAAGACTATGTTTAGCCTGGAAAAGTCATGACG
AAGCTACAGAGTAAAATACACATCTAAAACCACAAAAGAAACAGTTATGG
GAAAGAAGACAAACACCTGGGGAAAATGTTATCTCCTGGCAAGAACAAAG
TTAAATAGAATTCTAGAAACAACCAGAAACTTCTAAGACATCTGGGTGGA
TGGCTTGGGAAAGAATCTTTCATTGAAAATGTGTGTTATGTCTCTACCGT
CTCATAGGAAATTGTTGGAAAGCTACAACTGGTTACATTCATGATCTTAG
TCATGTTTATCTCCTGTCATAAACAATAATCAATAACAAGGTGAAAAGGA
GCAGAAGAACACATGCAGGAGCACACACAAACACGCGCACACACACACAG
AAATGTTCTACAGAGTTCTAAAAGTTGAACAATAAGGACCAATCCAGAGT
GACTACCACAGGGAGA

Query= MSMg01no532_n22.g1 MSMg01no532_n22.g1 CHROMAT_FILE:
MSMg01no532_n22.g1 PHD_FILE: MSMg01no532_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:55 2005
         (612 letters)



>mm_chr6_53901614_53902624
          Length = 1011

 Score = 1108 bits (573), Expect = 0.0
 Identities = 597/605 (98%), Gaps = 1/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacttgttcttagctcgcaatttatagcttggaaaaaaattgaacaaataagaaaggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacttgttcttagctcgcaatttatagcttggaaaaaaattgaacaaataagaaaggtc 260

                                                                       
Query: 61  agcttagtttttaaaaacatactaaaaatagatgttaagaatgcaagaaaatgaaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttagtttttaaaaacatactaaaaatagatgttaagaatgcaagaaaatgaaaggaa 320

                                                                       
Query: 121 aatttatgtgtatatactttaaccaagctcccaactttacaacccccaagcccccccccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttatgtgtatatactttaaccaagctcccaactttacaacccccaagcccccccccc 380

                                                                       
Query: 181 cacacacacacatctttatttttttaaagtgaaagacaaactttgtaagatgaaggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacacacatctttatttttttaaagtgaaagacaaactttgtaagatgaaggaaaa 440

                                                                       
Query: 241 agactatgtttagcctggaaaagtcatgacgaagctacagagtaaaatacacatctaaaa 300
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgactatgtttatcctggaaaagtcatgacgaagctacagagtaaaatacacatctaaaa 500

                                                                       
Query: 301 ccacaaaagaaacagttatgggaaagaagacaaacacctggggaaaatgttatctcctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacaaaagaaacagttatgggaaagaagacaaacacctggggaaaatgttatctcctgg 560

                                                                       
Query: 361 caagaacaaagttaaatagaattctagaaacaaccagaaacttctaagacatctgggtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagaacaaagttaaatagaattctagaaacaaccagaaacttctaagacatctgggtgg 620

                                                                       
Query: 421 atggcttgggaaagaatctttcattgaaaatgtgtgttatgtctctaccgtctcatagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 atggcttgggaaagaatctttcattgaaaatgtgtgttatgtctctaccgtcttatagga 680

                                                                       
Query: 481 aattgttggaaagctacaactggttacattcatgatcttagtcatgtttatctcctgtca 540
           |||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct: 681 aattgttggaaagctacaactggttacattcatggttttagtcatgtctatctcctgtca 740

                                                                       
Query: 541 taaacaataatcaataacaaggtgaaaaggagcagaagaacacatgcaggagcacacaca 600
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taa-caataatcaataacaaggtgaaaaggagcagaagaacacatgcaggagcacacaca 799

                
Query: 601 aacac 605
            ||||
Sbjct: 800 cacac 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1011
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1001
Effective search space:   602602
Effective search space used:   602602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)