NCCCCTATCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTATTAGAATGTGTAGTTTTATGCTAGACGAAATGGA
AAGAGGATTGTTTGCCTTTCATAAAATTTATCTGGGCTATACAATTATGT
ATAATTATCTTTACATATCATAAAAACACTGCCCTATGTCCCTTTGCATT
TCACTGGTCCCTCCAAAAACAGCTTCCCACTGAAAGCTAGAGTAAATGGA
ATGGGAGAGTGGGTGTGAGATTCGTTCAGGCTTATTTTAAAAAGTGATAC
CTTACGTAGCCTTTTGAATTCCTCTAAGTTAAGGGTAATCTCTCTGTCTT
GAACATCCTGTTTGATGACTATCATTCCTATATGTCTCTCATCATTATGA
CTAGTGCAAGTTAGCCAGATGCTGTGCCTGCCATTCAGATAAATGTAGCA
TCCATAAGATCATCTAGAGATGTGAAACTTTTTCACTTTGCTCTAGAAAG
ATATAAGATAATGGGGAAAATGTGATATATCAATTTTATTTAAATCTGGC
CAACAGATAGAACTGAGATAAAATAGGGCAAGTAAAATTAACTATAAACA
TAGGTGAAAAATTTGAAGAATAGACTTAATTAATAAAACTATAAAATAAT
AAAAACTGTCACTGTCAAATCAAGTTGTTTAAACACTGCTCACACTACAG
CAGGATATACAATGGTACATAGACACTTTTTA

CCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGAACATGGTGATAAAGGAT
GATAGGAGACAGAGGGATCAAGGACACGGCAAGAAAACTTAGAGAATTAA
CTAACTTAGGTGCATAGGGGCTTACAGACACTGGAACACCAACTAGGGAG
CCTGCATGGGACTGAATTAGGCCCTCTGCACATATATTACATTTATGTAG
CTGGGTGTTCCAATGGGACCCATAACAGTGGGAGCAGGAGCTGTTTCTGA
CTCTGTTTCCTGCCTTTGGGACACTTTCTTCATACTGGGTTACCTTGTCT
AAACTCAATAGGAGAAGATTCACTTAGTCTTACTGTAACTTGATATGCAA
AGGCTGGTTGATATTCATGGGTGTCCTCCATTTTTCTGAGGATAGAAGGA
GGAGGAGGAGATGGTAGGGGCGGTAGAATGGAGGAAAGAACTGGGAGGCA
AGCTGGGAAGAGAAACTGTGTTCTCTAGTATAAAGTAAATTAATTAAGCA
GAAGGGCCCACCATCTTCCTTCTGAGCCCAGTGGAAACTGCCGCATGACC
TCAGGATCACCTCGGGATCACGGGTGAGTGGAACAAAAAATCATCTCCAA
ACAAGAGGGTCATGTACCAGCAGGGACAGGGACAAAGAAACTCTCCTCCA
ACTGAGGATGGGGATTGTTCCTATTGGGGCCCCCTCCTACCATCTTTTTT
CTTAATT

Query= MSMg01no533_b04.b1 MSMg01no533_b04.b1 CHROMAT_FILE:
MSMg01no533_b04.b1 PHD_FILE: MSMg01no533_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:11 2005
         (679 letters)



>mm_chr6_45077567_45078645
          Length = 1079

 Score = 1290 bits (667), Expect = 0.0
 Identities = 673/675 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttattagaatgtgtagttttatgctagacgaaatggaaagaggattgtttgcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gaattcttattagaatgtgtagttttatgctagacgaaatggaaagaggattgtttgcct 713

                                                                       
Query: 65  ttcataaaatttatctgggctatacaattatgtataattatctttacatatcataaaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ttcataaaatttatctgggctatacaattatgtataattatctttacatatcataaaaac 653

                                                                       
Query: 125 actgccctatgtccctttgcatttcactggtccctccaaaaacagcttcccactgaaagc 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acttccctatgtccctttgcatttcactggtccctccaaaaacagcttcccactgaaagc 593

                                                                       
Query: 185 tagagtaaatggaatgggagagtgggtgtgagattcgttcaggcttattttaaaaagtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tagagtaaatggaatgggagagtgggtgtgagattcgttcaggcttattttaaaaagtga 533

                                                                       
Query: 245 taccttacgtagccttttgaattcctctaagttaagggtaatctctctgtcttgaacatc 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 532 taccttacgtagccttttgaattcctctaagttaagggtaacctctctgtcttgaacatc 473

                                                                       
Query: 305 ctgtttgatgactatcattcctatatgtctctcatcattatgactagtgcaagttagcca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctgtttgatgactatcattcctatatgtctctcatcattatgactagtgcaagttagcca 413

                                                                       
Query: 365 gatgctgtgcctgccattcagataaatgtagcatccataagatcatctagagatgtgaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gatgctgtgcctgccattcagataaatgtagcatccataagatcatctagagatgtgaaa 353

                                                                       
Query: 425 ctttttcactttgctctagaaagatataagataatggggaaaatgtgatatatcaatttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctttttcactttgctctagaaagatataagataatggggaaaatgtgatatatcaatttt 293

                                                                       
Query: 485 atttaaatctggccaacagatagaactgagataaaatagggcaagtaaaattaactataa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atttaaatctggccaacagatagaactgagataaaatagggcaagtaaaattaactataa 233

                                                                       
Query: 545 acataggtgaaaaatttgaagaatagacttaattaataaaactataaaataataaaaact 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 acataggtgaaaaatttgaagaatagacttaattaataaaactataaaataataaaaact 173

                                                                       
Query: 605 gtcactgtcaaatcaagttgtttaaacactgctcacactacagcaggatatacaatggta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gtcactgtcaaatcaagttgtttaaacactgctcacactacagcaggatatacaatggta 113

                          
Query: 665 catagacacttttta 679
           |||||||||||||||
Sbjct: 112 catagacacttttta 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)