Query= MSMg01no533_e09.b1 MSMg01no533_e09.b1 CHROMAT_FILE:
MSMg01no533_e09.b1 PHD_FILE: MSMg01no533_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:26 2005
(485 letters)
>mm_chr6_29082301_29083186
Length = 886
Score = 855 bits (442), Expect = 0.0
Identities = 469/482 (97%), Gaps = 8/482 (1%)
Strand = Plus / Minus
Query: 5 ggaattctttcttctcctcacccctctgcagtggacagagtaggatctatgcacggagcc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ggaattctttcttct-------cctctgcagtggacagagtaggatctatgcacggagcc 649
Query: 65 gttgtagtatgcttgtggctttcatacttagactcctccgctacagaagaacagcatgct 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gttgtactatgcttgtggctttcatacttagactcctccgctacagaagaacagcatgct 589
Query: 125 gctccaggcagtaatattgtataagtggtgtattttctcaaattattttctgtgctcctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gctccaggcagtaatattgtataagtggtgtattttctcaaattattttctgtgctcctc 529
Query: 185 atgaccctaaggatatttacggtatcctggcatttagagaaaaaagtgcatcaaagagtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atgaccctaaggatatttacggtatcctggcatttagagaaaaaagtgcatcaaagagtt 469
Query: 245 tctgactctaaccccgaacagctgaagctggctgtattctgaggcttatcccatgtcagg 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 468 tctgactctaaccccgaacagctgaagctgcctgtattctgaggcttatcccatgtcagg 409
Query: 305 atatgttttttaagtctaaaaccatcaggttttctttcctcccgtctccattaatttcct 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acatgttttttaagtctaaaaccatcaggttttctttcctcccgtctccattaatttcct 349
Query: 365 tccttcagggatcgagtctttggacagttctccg-tctcagcagtaacatgctgagacgc 423
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 348 tccttcagggatcgagtctttggacagttctctgttctcagcagtaacatgctgagacgc 289
Query: 424 tgaagaatcacgcacctctcattacatgcattatgaacagtgaagtattacagatttttc 483
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgaagagtcacgcacctctcattacatgcattatgaacagtgaagtattacagatttttc 229
Query: 484 tc 485
||
Sbjct: 228 tc 227
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 886
Length adjustment: 10
Effective length of query: 475
Effective length of database: 876
Effective search space: 416100
Effective search space used: 416100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_e09.g1 MSMg01no533_e09.g1 CHROMAT_FILE:
MSMg01no533_e09.g1 PHD_FILE: MSMg01no533_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:26 2005
(552 letters)
>mm_chr6_29011738_29012688
Length = 951
Score = 986 bits (510), Expect = 0.0
Identities = 545/562 (96%), Gaps = 12/562 (2%)
Strand = Plus / Plus
Query: 1 tctctccatacatttgccttccagaaatgcagaggttagactataaggaaagacagggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tctctccatacatttgccttccagaaatgcagaggttagactataaggaaagacagggca 251
Query: 61 ctcagatacaccaggcagctcagcgcttgcttcccatgccctgctctacagaatactgca 120
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 252 ctcagatacaccaggcagatcagcgcttgcttcccatgccctgctctacaaaatactgca 311
Query: 121 tgatcccatctctcctgctgtctgtgagctctctagatctacaatcatgtctgtgctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgatcccatctctcctgctgtctgtgagctctctagatctacaatcatgtctgtgctgac 371
Query: 181 atttcacctaaaccaaagactaagactccatctgtgtgcgcattgtctttgccctcagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atttcacctaaaccaaagactaagactccatctgtgtgcgcattgtctttgccctcagga 431
Query: 241 gtaccacagagttctgcaaggaagccacacaataggcataggaagctcagtattgggttc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtaccacagagttctgcagggaagccacacaataggcataggaagctcagtattgggttc 491
Query: 301 cttggcaaagacagggcacctagagtgctggaaatggacagacaca---------tagac 351
|||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 492 cttggcaaagacagggcacctagagtgctggaaatggacagacatagaatggaaatagac 551
Query: 352 gggttggtggtggggagtcactgggaataacagtgcacacagc-gtaggtaagactgaaa 410
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 552 gggttggtggtggggagtcactgggaataacagtgcacacagcag-aggtaagactgaaa 610
Query: 411 ggaatcagaactaggtaggcaggggatacagaagagatgtggaggctttggagggagaga 470
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 611 ggaatcagaactaggtaggcaggg-atacaggagagatgtggaggctttggagggagaga 669
Query: 471 aagacaggcactggagcactttaagacagcttcttaggtatttctgtggggcaaaagtaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aagacaggcactggagcactttaagacagcttcttaggtatttctgtggggcaaaagtaa 729
Query: 531 attctaaaatggcaggccatgc 552
||||||||||||||||||||||
Sbjct: 730 attctaaaatggcaggccatgc 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space: 510022
Effective search space used: 510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
