BAC Information

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BAC

Clone NameMSMg01-533O10
Chromosome6 (Build37)
Map Location 29,732,785 - 29,733,313
singlet/doubletsinglet
Overlap gene4631427C17Rik
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo
Downstream geneD330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533O10.T7 (MSMg01no533_o10.b1)MSMg01-533O10.TJ (MSMg01no533_o10.g1)
ACCAG601714AG601715
length721739
length of high quality
(start - end)
195 (242 - 436)529 (140 - 668)
definitionCHROMAT_FILE: MSMg01no533_o10.b1 PHD_FILE: MSMg01no533_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:13 2005CHROMAT_FILE: MSMg01no533_o10.g1 PHD_FILE: MSMg01no533_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTATCTCCCTCTTTTGTGGCGCTATACGATTCATTATATGGAGAGG
ATCCGCGGTATTCACTCAAAAAAGAACAAAATTGCACTTTTTCAATTATC
AATGCGTCCTTCCTCCCAGTCTTGATCCAGCTGAATCAGGCCTTCTTTCT
GCCACAGTCTGCCACAGTCGGCTAGCCCACCTAGGGTGGAGTCTTCTGAC
CTAAGTCTATTGTGTGCCACATCTGCAGCTTCCTGGATGAAGCCACCACC
TGCTGAACAGCCTGAGCTTGCTTTCCTGATGAGATCTTGACAAAGAAACA
AGATCCTGGGCCACCCCCTTTATATTCAAGACCCCATAATTAAGGATTGA
GCCTTGATCAGAGAACTTTTGTCCTGGCTCATTATTTCTCTTGACGTCCT
TCCCATCCATCCCCAGCTTCCCTTTCAGGAACCCAGTAACCTATGGTCTC
TGGTAGCTGTAATTCTCACTGAAGGAGACTTATCCAAACGATTTATCTGT
TGTCTAGGCTGTAGGAGAAAAGATATTGTCTTTGGCTTCCGTTGCCGTGA
TAAAACACTACGACCTAAAGCAAGCTATGATGGTAATAATTTTTTCGCTG
TATGCACTGGCTGGTTTTGTGTGCCAACTTGACACTAATTAAATTCCCCA
GAGAGGAAGTGACATCACGTCTTATTATGCCTCTCCGCCATCCTGTTCCC
ATGTTTTTTCTTCATTAATGG
CACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAACCTTAAAATCAGACTACTCTCT
GACTTACTGATGTTTCAGGTCAGATCAGAATCTAGCCATAAGTACAAGTT
ACCTACCAGTTTGTTTTAAATAAGCCTTATGTAAGTAAGTTTGGCTTGCA
TGAACAAGTCCTAAAAGGCTAATGGCTTGCAAATATGAGTATGAATTTCT
GGACTTTTAAAGCTGTAACAAGGGAATACCATAAAGGTTCAGCTACACTG
TGAAAGCAACTAGTTTCCAGGGGTGATATACCTCAGTCAAGGCTGACCTC
CCCAAGCTACAAGTCTGCTTTCATGACTGCCCATAGCAAACGAAATTATA
TTTACTTCTTTCCCTGGGACACTTCCTATACTCTTTTCTAGGGCAAGAAT
GGTAACTTACTGATACTATCACCTTAGGACTAAGTGATGTTTAGCACACA
ATAAATAAATGAATTTACATAAAACAGCTCACAGTTCATTAGAGAAGCAA
GAGTTATAACAAAGCCCTGCAGGTCACACACCACAGGGGCATGGTACAAG
CCTTTATCCAAGGTCTGGTATATAGACCCTTTATCCCAAACTGGCCTCAA
GCTCACTCTGTAACTCAGGCTGGCCTTGAATTTATAGCCATTCTCCTGCT
TCATCCTCCTAAGTGCTGAGATTATAGACATGAGATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_o10.g1 MSMg01no533_o10.g1 CHROMAT_FILE:
MSMg01no533_o10.g1 PHD_FILE: MSMg01no533_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:13 2005
         (529 letters)



>mm_chr6_29732585_29733513
          Length = 929

 Score = 1015 bits (525), Expect = 0.0
 Identities = 528/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtacaagttacctaccagtttgttttaaataagccttatgtaagtaagtttggcttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aagtacaagttacctaccagtttgttttaaataagccttatgtaagtaagtttggcttgc 670

                                                                       
Query: 61  atgaacaagtcctaaaaggctaatggcttgcaaatatgagtatgaatttctggactttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atgaacaagtcctaaaaggctaatggcttgcaaatatgagtatgaatttctggactttta 610

                                                                       
Query: 121 aagctgtaacaagggaataccataaaggttcagctacactgtgaaagcaactagtttcca 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aagctgtaacaagggaatacaataaaggttcagctacactgtgaaagcaactagtttcca 550

                                                                       
Query: 181 ggggtgatatacctcagtcaaggctgacctccccaagctacaagtctgctttcatgactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggggtgatatacctcagtcaaggctgacctccccaagctacaagtctgctttcatgactg 490

                                                                       
Query: 241 cccatagcaaacgaaattatatttacttctttccctgggacacttcctatactcttttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cccatagcaaacgaaattatatttacttctttccctgggacacttcctatactcttttct 430

                                                                       
Query: 301 agggcaagaatggtaacttactgatactatcaccttaggactaagtgatgtttagcacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agggcaagaatggtaacttactgatactatcaccttaggactaagtgatgtttagcacac 370

                                                                       
Query: 361 aataaataaatgaatttacataaaacagctcacagttcattagagaagcaagagttataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aataaataaatgaatttacataaaacagctcacagttcattagagaagcaagagttataa 310

                                                                       
Query: 421 caaagccctgcaggtcacacaccacaggggcatggtacaagcctttatccaaggtctggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caaagccctgcaggtcacacaccacaggggcatggtacaagcctttatccaaggtctggt 250

                                                            
Query: 481 atatagaccctttatcccaaactggcctcaagctcactctgtaactcag 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atatagaccctttatcccaaactggcctcaagctcactctgtaactcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)