BAC Information

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BAC

Clone NameMSMg01-533O11
Chromosome6 (Build37)
Map Location 37,436,088 - 37,436,586
singlet/doubletsinglet
Overlap genenone
Upstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
Downstream geneAkr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533O11.T7 (MSMg01no533_o11.b1)MSMg01-533O11.TJ (MSMg01no533_o11.g1)
ACCAG601716AG601717
length726747
length of high quality
(start - end)
409 (55 - 463)499 (78 - 576)
definitionCHROMAT_FILE: MSMg01no533_o11.b1 PHD_FILE: MSMg01no533_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:13 2005CHROMAT_FILE: MSMg01no533_o11.g1 PHD_FILE: MSMg01no533_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGGGGTTGAGATAGAATAGTCGCCGCTATACGACTCACTATATTTCAGA
GGATCCGCGGAATTCTGGATTATATTTTTGAGGTGGGTGGTCCAATCCCT
CAATTGGGTGCTGTGCCTATCCACTAGATATGGTCTCTTCAAGTTCTATT
TCCCCTTTGTTGGGTATTTCTACTAAAGTCCCTTGTTGGGTCCTGGGAAC
CTCTTGGGTCCCTGGCATCTGGGACTTTCTAGTGGCTATCCCCAATTCCC
CCTCCCACACTGCTACACACCTACTTTCAAATTCCTGGCCCTCCGTACTT
TTCTCCTGTCTCCTCCCATATCTGAATTGCCCCCCCTTTCCCTCCCCCTC
CTCTCTTCCTCTACTTCCCAGAGATTATTCTCTTCCCTCTACTGAGTAGG
ACTGTAGCATCTACACTTTGGTACGACCCTTTTTCTTCTTGGGTTTCTTA
TGGTCTTTGGATTGTATTGCGGGTATTCTGAGTTTCTTTCGGGCTAACAC
CAACTTATCATTGAGCTTATACTCTCATATCCCCTAATGAACTTTTAACA
GTTATTAAAAGCCTCCCTATCATCAAATCCCTAGGACCTATTTTTTGATT
GTAGAGTACAAATTCATCTTACCTTCCCATAACATCTTACACCATTACCC
TCCATATTATTCCCTAATTTTTTTTTTTTATGAACATCCTCCTAACACCT
TCCATGTATTTTTCAGCTACTTTAAN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTTTTAAAAATGTGTTTGTT
TTGCTTTTTATTTTTATGCAGACTTTGAATCTAACAAAACCAGACTTTAT
TTATTATTTTAGATATATTTTTATTGTGTGTGTACACACGTGCTTGCATA
TCAACATGCACATACACCAAAACATCTATGTGGAAGTCAGAGGATAACAT
GTGAAAGTTAGTTTTCTCCTTCACTGTGTGGGTCCTGAGGGTCAGACTTA
AGTCCTCCAGCTTTGCAGCACCTGCCTTTACCTGATGAGCAATCTCATCA
GTGCCCAAACTAGTCCTTAGGTGGTTGAGTTTTCGTTTGTTTTAGTCTGG
AGATTTTTTTTTTCTATTTCCAATATTTCAAAAGAGCCACTGTTATTAAA
GAACACTAGACAGGGGGTGGGGAGGATAGGTTGGTCATAAAGAGACTTCC
TCAATCACTCTCCACCTTAGTTTTTGAGCTTAGATCTGCTTGGTCCTGGT
GCTCACTTATTCAGCAAGACTGGCAGGCCAGTGAGCTGTAGGGACTGCTC
TGTCTCCGTCTCCTCAGTGCTGAGATTGCAGCCATGTGCAGCTAATCTGT
GCCTGGATTTTCTCATATGGGCTCTAGGGCACAAACTAAGTCCTCATGTT
TGTACACCATTATCTTTATTGTCTGAGTCATCTTTCCATCTCCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_o11.g1 MSMg01no533_o11.g1 CHROMAT_FILE:
MSMg01no533_o11.g1 PHD_FILE: MSMg01no533_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:14 2005
         (499 letters)



>mm_chr6_37435886_37436786
          Length = 901

 Score =  868 bits (449), Expect = 0.0
 Identities = 486/499 (97%), Gaps = 3/499 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   tttttaaaaatgtgtttgttttgctttttatttttatgcagactttgaatctaacaaaac 63
           ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 203 tttttaaaaatgtgtttgttttggtttttatttttatgcagactttgaagctaacaaaac 262

                                                                       
Query: 64  cagactttatttattatttt-agatatatttttattgtgtgtgtacacacgtgcttgcat 122
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 cagactttatttattatttttagatatatttttattgtgtgtgtacacacgtgcttgtat 322

                                                                       
Query: 123 atcaacatgcacatacaccaaaacatctatgtggaagtcagaggataacatgtgaaagtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atcaacatgcacatacaccaaaacatctatgtggaagtcagaggataacatgtgaaagtt 382

                                                                       
Query: 183 agttttctccttcactgtgtgggtcctgagggtcagacttaagtcctccagctttgcagc 242
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agttttctccttcactatgtgggtcctgagggtcagacttaagtcctccagctttgcagc 442

                                                                       
Query: 243 acctgcctttacctgatgagcaatctcatcagtgcccaaactagtccttaggtggttgag 302
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acctgcctttacccgatgagcaatctcatcagtgcccaaactagtccttaggtggttgag 502

                                                                       
Query: 303 ttttcgtttgttttagtctggagatttttttttt--ctatttccaatatttcaaaagagc 360
           |||| |||||||||||||||||||||||||||||  |||||||||| ||||||  |||||
Sbjct: 503 ttttagtttgttttagtctggagattttttttttttctatttccaacatttcagcagagc 562

                                                                       
Query: 361 cactgttattaaagaacactagacagggggtggggaggataggttggtcataaagagact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cactgttattaaagaacactagacagggggtggggaggataggttggtcataaagagact 622

                                                                       
Query: 421 tcctcaatcactctccaccttagtttttgagcttagatctgcttggtcctggtgctcact 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcctcaattactctccaccttagtttttgagcttagatctgcttggtcctggtgctcact 682

                              
Query: 481 tattcagcaagactggcag 499
           |||||||||||||||||||
Sbjct: 683 tattcagcaagactggcag 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 901
Length adjustment: 10
Effective length of query: 489
Effective length of database: 891
Effective search space:   435699
Effective search space used:   435699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)