Query= MSMg01no534_e24.b1 MSMg01no534_e24.b1 CHROMAT_FILE:
MSMg01no534_e24.b1 PHD_FILE: MSMg01no534_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:47 2005
(658 letters)
>mm_chr6_68397315_68398372
Length = 1058
Score = 1060 bits (548), Expect = 0.0
Identities = 623/648 (96%), Gaps = 2/648 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttcccctcgacactgtatttgaattccaagcacaatatatagttatttgtga 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gaattcatttccccaagacactgtatttgaattccaagcacaatatatagttatttgtga 792
Query: 65 attattcaaatgagaaaagataaattaacagctctcctcataccaacccatattgaccta 124
|| ||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |
Sbjct: 791 atcattcaaatgagaaaagataaattaatagctttcctcataccaacccatagtgaccaa 732
Query: 125 agtgttactatagacttcatttagctttagatttcatggccatagaacaaatgacagagg 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agtgtttctatagacttcatttagctttagatttcatggccatagaacaaatgacagagg 672
Query: 185 gaagactccgtggcttgaagatcaaacaatgggtgaaattcccatgttttctatcatata 244
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 671 gaagactctgtggtttgaagatcaaacaatgggtgaaattcccatgttttctatcatgta 612
Query: 245 caatccacacacagatgagtggaaacagccccctgaaaatataaaaggaatgacttcttt 304
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 611 caatccacacacagatgaggggaaacagccccctgaaaatataaaaggaatgacttgtga 552
Query: 305 tagagtatgttcacatagatgttagactaagtcccaggagtgtgctttcttcactgtagg 364
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tagagtatgttcgcaaagatgttagactaagtcccaggagtgtgctttcttcactgtagg 492
Query: 365 ccaaaggaagtcacattaatagctcttcataagtggggaagct-gaagcacacacgttcc 423
||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 491 ccaaaggaagtcacattcatagctcttcataagtggggaagctggaa-cacacacgttcc 433
Query: 424 ttcactgaagacaggtagaggatgtggctatgagcaaatagagcccttatgtgcacgtct 483
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 432 ttcactgaagacaggtagaggatgtggctatgagcaaatagaacccttatgtgcacgtct 373
Query: 484 gaaggcctctgcttgaaggactcagtagaacttgcagaatttgttctttctctgacctga 543
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 372 gaaagcctctgcttgaaggactcagtagaacttacagaatttgttctttctctgacctga 313
Query: 544 aggtgaagatcccttttctttttctcttgctgtgctcagtgacttagcctctattataga 603
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 312 aggtgaagatcccttatctttttctcttgctgtgctcagtgacttaacctctattataga 253
Query: 604 tgtaaaagtaacaaaacttgctaagaaaaatctgaagtaccagatttt 651
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgtaaaagtaacaaaacttgctaagaaaaatctgaagtaccagatttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_e24.g1 MSMg01no534_e24.g1 CHROMAT_FILE:
MSMg01no534_e24.g1 PHD_FILE: MSMg01no534_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:47 2005
(548 letters)
>mm_chr6_68052822_68053769
Length = 948
Score = 775 bits (401), Expect = 0.0
Identities = 520/565 (92%), Gaps = 17/565 (3%)
Strand = Plus / Plus
Query: 1 ctttagggtcttctctttcttcatcttttttctcatcttcaatcttgcccttttctttca 60
|||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 201 ctttagggtcttctttttcttcatccttcatctcatcttcaatcttgcccttttctttca 260
Query: 61 tctcctctgaaacttcattctccttatctcgtttccactcacattcttcttcagtatgtt 120
||||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||| |||
Sbjct: 261 tctcctccgaaacttcattctccttatctggtttccactcatattcttcttctgtaggtt 320
Query: 121 catagattgcattaatgatctcaaatcgcttatcaaataaagactgatagagaacagcat 180
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 321 catagattgtattaatgatctcaaatcgcttatcaagtaaagactgatagagaacatcat 380
Query: 181 actttctcttgagatcatgaacttcctcataaaatttggcttctaactgtgcccatttaa 240
|||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct: 381 actttctcttgagatcatgaacttcctcctagaatttggcttctatctgtgcccatttaa 440
Query: 241 cttgaaaattcttgagagcattcattcatcttttgactaccttaggtaagctttcaatgt 300
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 441 cttgaaaattcttgagagcattcactcatcttttgactaccttaggcaagctttcaatgt 500
Query: 301 atcctgttggtgtgtctaccagaccatcaagtctttcctaaactgctgcaagaatctgag 360
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 atcctgttggtgtgtctactagaccatcaagtccttcctaaactgctgcaagaatctgag 560
Query: 361 gattttgcatcatctgaacagttagctgacatgctttgatttttgtttctccaccagttt 420
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 561 gattttgcatcatctgagcagttagctgacatgctttgatttttgtttcttcaccagatt 620
Query: 421 cttcttcttcttctt-cttct--tc-ttct--t--t--ttcttcttct--tc----ttct 464
|| ||||| |||||| || || || |||| | | | || || || || ||||
Sbjct: 621 ctccttctccttctttctcctcctccttctcctcctcctcctcctcctcctcctccttct 680
Query: 465 tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct 740
Query: 525 tcttcttcttctt-cttcttcttct 548
||||||||||||| |||||||||||
Sbjct: 741 tcttcttcttctttcttcttcttct 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 208
Number of extensions: 52
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
