BAC Information

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BAC

Clone NameMSMg01-534H12
Chromosome6 (Build37)
Map Location 82,552,775 - 82,553,416
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
Downstream genePole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534H12.T7 (MSMg01no534_h12.b1)MSMg01-534H12.TJ (MSMg01no534_h12.g1)
ACCAG602147AG602148
length724717
length of high quality
(start - end)		677 (45 - 721)642 (74 - 715)
definitionCHROMAT_FILE: MSMg01no534_h12.b1 PHD_FILE: MSMg01no534_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:00 2005CHROMAT_FILE: MSMg01no534_h12.g1 PHD_FILE: MSMg01no534_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCTGTGGGGAGCGGGTGTGGCG
GCAGTCCCAAAGGCACCAGGGACTGCAGCTAAGTCATATGACTTGCACCT
GACTTCCTCATATAAGACACAAACATCTTGAGTGCTGCGCAGGTGTACCA
GGATTCAGGTGAATCCAATTTGGTGGAGATTTGCCCCTGCTGCCCTGATT
AGCTGAAGCTGCGTGCCTGGTGAGGTGGCGTGGCCTGCTGTGCGTGGATG
GGAACTGAGAGTATATAAGAGTGAGAGGCCCGGGTTAGAGGGAGGATTAT
TATTCGAGAGAGGATTGTTATTATTGGGAGATATAAAAACAAGGGAGATA
TAAAAACAAGAGAGATATAAAAACAAGGGAGATAGAAACAAGGGAGATAT
AAACAAGGGAGATATAAACAAGAAGAAATAGGACTGAATAAACGTGTGCA
GAAGGATCCTGTAGCAGCCTCGTTCTTGCTGGCGAGTTGGGGGCACGCGA
GAAGTGGTGCCGAAACCCGGGACAAGAAACATCTTCAGGCACGAGCGAAG
ACCCCCTGCTACAGGGAGGATTCA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGGGATTTAATTAATCATCCTCTTA
TTTTGAATCATTAATTTGGGTCTAATGTCTCCCTATTACAGAATAGTCTA
GCAACGGCGAACATTTTCATGTTTCTTTTGTCCCTCGTTCAGGGTTGTTC
TTCTGGCTTATTCCCAGGAGTGGAATCTCTGTGTCAAAAATGTTCATATT
TTCAGAACTACTGGTGATTTCTGCCAAGTTGCCTCCCCAGATGTTTCCAT
GTGTCGCCACTACCCGGGGAAACACCTGAATGGGAGCCCTAACATTTTGT
AAAGAACACTCCGTACTCCCCAGTTCTAAGTGATTCGTTATCTAAAGAAA
TCAGACCCCAAATGGCCAACTCCCTCAGGCTGCTCAACGTGAAGGGAAAG
GAAGAGAGCCTAGAGCTCTGAATTCACATTGTAGCCCCTCCAAAATCCTT
CTCCTGGATGCTATGCCCAATTGCCTCTCTTTATAGCTATAGCCTTTCTC
TTCATGCCAATCATGAATTCTCACTGTATCTGGGCACAGTCTGTCTTGTT
AATCAACTGAACACGATGGCTTTTGACTTCGGTTTTATGACTGCTCATAA
TTCAGACACATTTCTGCTGGGCTGGATTCCAGGGGCAGAAAGACACGAGA
AGGAGCAGGTGGACAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_h12.g1 MSMg01no534_h12.g1 CHROMAT_FILE:
MSMg01no534_h12.g1 PHD_FILE: MSMg01no534_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:00 2005
         (642 letters)



>mm_chr6_82552575_82553616
          Length = 1042

 Score = 1226 bits (634), Expect = 0.0
 Identities = 640/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgggatttaattaatcatcctcttattttgaatcattaatttgggtctaatgtctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgggatttaattaatcatcctcttattttgaatcattaatttgggtctaatgtctccc 260

                                                                       
Query: 61  tattacagaatagtctagcaacggcgaacattttcatgtttcttttgtccctcgttcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattacagaatagtctagcaacggcgaacattttcatgtttcttttgtccctcgttcagg 320

                                                                       
Query: 121 gttgttcttctggcttattcccaggagtggaatctctgtgtcaaaaatgttcatattttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgttcttctggcttattcccaggagtggaatctctgtgtcaaaaatgttcatattttc 380

                                                                       
Query: 181 agaactactggtgatttctgccaagttgcctccccagatgtttccatgtgtcgccactac 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 agaactactggtgatttctgccaagttgcctccccaggtgtttccatgtgtcgccactac 440

                                                                       
Query: 241 ccggggaaacacctgaatgggagccctaacattttgtaaagaacactccgtactccccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggggaaacacctgaatgggagccctaacattttgtaaagaacactccgtactccccag 500

                                                                       
Query: 301 ttctaagtgattcgttatctaaagaaatcagaccccaaatggccaactccctcaggctgc 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ttctaagtgattcgttatctaaagaaatcagaccccaagtggccaactccctcaggctgc 560

                                                                       
Query: 361 tcaacgtgaagggaaaggaagagagcctagagctctgaattcacattgtagcccctccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaacgtgaagggaaaggaagagagcctagagctctgaattcacattgtagcccctccaa 620

                                                                       
Query: 421 aatccttctcctggatgctatgcccaattgcctctctttatagctatagcctttctcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatccttctcctggatgctatgcccaattgcctctctttatagctatagcctttctcttc 680

                                                                       
Query: 481 atgccaatcatgaattctcactgtatctgggcacagtctgtcttgttaatcaactgaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgccaatcatgaattctcactgtatctgggcacagtctgtcttgttaatcaactgaaca 740

                                                                       
Query: 541 cgatggcttttgacttcggttttatgactgctcataattcagacacatttctgctgggct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgatggcttttgacttcggttttatgactgctcataattcagacacatttctgctgggct 800

                                                     
Query: 601 ggattccaggggcagaaagacacgagaaggagcaggtggaca 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggattccaggggcagaaagacacgagaaggagcaggtggaca 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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