BAC Information

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BAC

Clone NameMSMg01-534J21
Chromosome6 (Build37)
Map Location 48,030,403 - 48,030,933
singlet/doubletsinglet
Overlap geneZfp746
Upstream geneCntnap2, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534J21.T7 (MSMg01no534_j21.b1)MSMg01-534J21.TJ (MSMg01no534_j21.g1)
ACCAG602260AG602261
length952769
length of high quality
(start - end)
---538 (69 - 606)
definitionCHROMAT_FILE: MSMg01no534_j21.b1 PHD_FILE: MSMg01no534_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:11 2005CHROMAT_FILE: MSMg01no534_j21.g1 PHD_FILE: MSMg01no534_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAACCACTCCACATTTCAAACGATNCGCGGAATTCACAACTTGTGTGCT
GTGTTCGTGTATGTGGCGGGGGGAGAGGGGGGGAGGGGTGTGGGGGGGTG
TGGTGGGTGGTGTGGGTGGTGTGGTNCCTCATGACCCGAAAATGGGCACT
TTCCCCCCCTCTCTCCTAATTGGGGGGGGGAAAAAAAAAATTTTTTCAAA
GGGTTTCCAAAACACCCTATTGGGCGGGGGTGGTCCTCTTTTTNGGGGGA
AAAAAAAACACCCCCCCCCCCCCCGCCAAACAAANNGGGGGGGACACATT
GCGCCCCCCTTTTTTTTATTTTTTCTTTATAAAAAAACTCCCCCCCACAA
CGTGACCCCCNGNGNNNNNGGGGGGGTTTTTTTTTTTTATATATAGAAAT
TTTTTTTTTTTTTTTTTTTTTCTCTCCCCCCCCCNANAAACAAAAACCCC
CCCCCCCCCTCCCCCNNNAAAAAAAAACCCCCCCCCCCCGTCCCACNNNN
NTTTTTTTTTTTTTTTTTTGTGGGGGGGGTGGTGGGGGGGGGGCGGCTCC
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCCTTTTTCTCCCNCCAAA
AAAAAAAAAAAAAAAAAAAAAAAACACAAAAANNNCCCCCCCCCCCCCCC
CCCCCCCCACAAAAAAAAAAAAAAAAACACAAATAATGGCNNCNCACCCC
CCCCCCTCCNNCCCCCCCCCNNNCNNNNNNNNANNNTNNTANNNTCNNNG
GNATTCNNNACAANNAAAAANTTTNNNNNNNNCNNNNNNNNAAANAAAAA
AAAAAAAAAAATATANAAAAATACATTACCCTCTCCCTCCCTCTCTTCCT
CTTCTCCCTTTTTTNTTTCTTNTCCTTTTNTTNNCTCTTTTTTTCCCCCC
CCCCTCCCTCTCCCCCCCCANNANTTATTATAGTAAATGTTTTCTGTCAT
TG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGGTTCATGAGCCCTATATAAACAGGGCTAG
GTCTGGCCTAGGAGCCATACTTTGTCAACCTCTGAGCTAGTGAGGGAACT
GATGATATGGTGACTACTGGCTGATAATGAGCTCCCACTAACTGGTCAGG
AACACCAGGTGAGTGGCTGTAGGTTTATGGGTTTGCCACTGGCAGCTGTC
TGGGTGCAGGTGCAGAGCAGACAGTCAATTTCTCGGGATTACAGTTTCAC
CAAGTACAGTGAATACAGGGAAAGGAGAGTGTATAAGAAGGGGGCAACTA
ATGATGGCCACAGGGACAGGAGGATGAGGAGACTGTGAAGGCTTTGAGGA
TCCTATAGACTGAAGACCTGTTGGACTGGAAAAATCAGGAGCAGGAAGGA
GCTGTGGAGTCCATGCTAGAAATGTGGAAGGAAACTAACAGTGCCAGGAC
AGTGAAGGGAGTAAAGCCACCACATGGATATAGCAGTCTTAGCTCTAAGG
CAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGATTTTNATTATTGATTANCAAGGGTCAGTGATGAGTAAGGACACCT
GAAAGCCCAATGTCAAAAGGACATGGGAAAAGAGGACAAAACAGCTGCTG
GGCAGCAGCACTTGTGTAAGAGGCCAAGCTCATCCTGAGCAAAACAGATG
GGTATTCCCTGGTCCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_j21.g1 MSMg01no534_j21.g1 CHROMAT_FILE:
MSMg01no534_j21.g1 PHD_FILE: MSMg01no534_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:11 2005
         (538 letters)



>mm_chr6_48030203_48031140
          Length = 938

 Score =  996 bits (515), Expect = 0.0
 Identities = 527/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggttcatgagccctatataaacagggctaggtctggcctaggagccatactttgtcaa 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggtttatgagccctatataaacagggctaggtctggcctaggagccatactttgtcaa 260

                                                                       
Query: 61  cctctgagctagtgagggaactgatgatatggtgactactggctgataatgagctcccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctgagctagtgagggaactgatgatatggtgactactggctgataatgagctcccac 320

                                                                       
Query: 121 taactggtcaggaacaccaggtgagtggctgtaggtttatgggtttgccactggcagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactggtcaggaacaccaggtgagtggctgtaggtttatgggtttgccactggcagctg 380

                                                                       
Query: 181 tctgggtgcaggtgcagagcagacagtcaatttctcgggattacagtttcaccaagtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgggtgcaggtgcagagcagacagtcaatttctcgggattacagtttcaccaagtaca 440

                                                                       
Query: 241 gtgaatacagggaaaggagagtgtataagaagggggcaactaatgatggccacagggaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaatacagggaaaggagagtgtataagaagggggcaactaatgatggccacagggaca 500

                                                                       
Query: 301 ggaggatgaggagactgtgaaggctttgaggatcctatagactgaagacctgttggactg 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaggatgaggagagtgtgaaggctttgaggatcctatagactgaagacctgttggactg 560

                                                                       
Query: 361 gaaaaatcaggagcaggaaggagctgtggagtccatgctagaaatgtggaaggaaactaa 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gaaaaatcaggagcaggaaggagctgtggagtccatgcttgaaatgtggaaggaaactaa 620

                                                                       
Query: 421 cagtgccaggacagtgaagggagtaaagccaccacatggatatagcagtcttagctctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtgccaggacagtgaagggagtaaagccaccacatggatatagcagtcttagctctaa 680

                                                              
Query: 481 ggcaggggagagagagagagagagagagagagagagagagagagagagaga 531
           ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcagggtagagagagagagagagagagagagagagagagagagagagaga 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)