BAC Information

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BAC

Clone NameMSMg01-535A24
Chromosome6 (Build37)
Map Location 126,301,269 - 126,301,861
singlet/doubletsinglet
Overlap genenone
Upstream geneTnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565, LOC667427
Downstream geneLOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535A24.T7 (MSMg01no535_a24.b1)MSMg01-535A24.TJ (MSMg01no535_a24.g1)
ACCAG602601AG602602
length781780
length of high quality
(start - end)		664 (51 - 714)593 (77 - 669)
definitionCHROMAT_FILE: MSMg01no535_a24.b1 PHD_FILE: MSMg01no535_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:46 2005CHROMAT_FILE: MSMg01no535_a24.g1 PHD_FILE: MSMg01no535_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGAGATCTTCCTATTTTTTGTAAGCACAAACAGTAACCTT
AACTGGGTGGGATCTTGCCCTGTGACCACCATTTGCTAAATTTTTTTATC
TCCTTCCTAAATCTTTCTGAAAAGCTGGCTAATAGTGCCATAGTGCAACT
GCCTATGTTTATTAGGTCCATGAAATCCCTCATATAATTCATATTGAATC
CTTATATTTTGCATGGTTGAGAAATTATATCATATATATAATACTATATA
TATATATATGAATATAATTTATTTAATTTTATTTCATGTGCATTGGTGTC
AGATCCCCTGGAACTGTTCCAGACAGTTGTGAGTTGCCATGTGGGTACTG
AAGATTGAACCCATGTCCTCTTGAGGAGCAGACAGTGCCCTTAACCACTG
AGTCATTTCTCCAGTCTCCACTCACATTATCAGAGTTCTTTCCCACAGCC
TTAAGGGCTGTCCTGAAGGTCTCGGTGTTTACCATATTGCTGAGACATTA
GACACACCCTTGCTTCCCGGATTCATGCTGCCTCTGATTATCATAGAGTC
CTTGGCAGAGAGGACATTCTCCCAAAGGAGGAATTTAAAGTAAAATATAC
AAACAAGCCTTGTGCCTAGCAACCATCAACACGTGTAGAGGCCCACACCC
TGCTGGCACTGTTCCAGGGGCAGGAAATCATGTCATACCATCCCTTTCAC
ATGGNCATGCAAGACTCAGCACTCTACCCCT

NTTTCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGTTCTTATGTGGATTAATAGAG
CCATTTATATACTCATATATGGTTATATATTTCTATGTCTGTATCAAAGG
AAATGACAGAAGGGAGGAGACTCAGAGAACAAGAAAAAAAAAGAGAAAAG
GAAGGGAAAGAGGAAAGGAAGGGAAAGGGAGCAGGGCAGAAAATGGCCGA
CCCTCATGATGCACTTGAAAGAAATGATCATTATAAAGCCTATGATTGAA
CAATGATTATGTACCAAGAAACCTGTCTTAAAATATGTAAAAGGCATATG
CAAATATCACACCATTTTCTATGGGGAACTTGAGCATCTATGAAATTTCA
TATCTATATACTATCTTTAGAAGCAATGCTCACAAGATACTAAGAGGCTG
CTGCCCTAACAGATAATCCAGGGGATGCTAAGGAAGTGTTAATGCCATGC
ATGTACCAGCCAAAAGATATAAAAGAGATGGAGAAACAAGAATAAGCATC
TATGGTCTCAGGTATGCATCCTAAAGGTAGTGTACTGGTAGAAAATTTAG
GCAGGATAACAGATCAGGATATGGTTGCCTTAAAAAGGGAACTTATTTAC
ATTCAGTCCCCAAGATGAAGAGGGTTTCATGGCATCAGAGTCCAAAGGAA
GTTTCTGTTCANTCCANANAGAGAGGAGGATGGATGTTGGATAAACATTT
TTATTGTGTTATCCCAGGGAAGGAGTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_a24.g1 MSMg01no535_a24.g1 CHROMAT_FILE:
MSMg01no535_a24.g1 PHD_FILE: MSMg01no535_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:46 2005
         (593 letters)



>mm_chr6_126301069_126302061
          Length = 993

 Score = 1123 bits (581), Expect = 0.0
 Identities = 590/593 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttcttatgtggattaatagagccatttatatactcatatatggttatatatttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggttcttatgtggattaatagagccatttatatactcatatatggttatatatttctat 260

                                                                       
Query: 61  gtctgtatcaaaggaaatgacagaagggaggagactcagagaacaagaaaaaaaaagaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 261 gtctgtatcaaaggaaatgacagaagggaggagactcagagaacaagaaaaggaaagaga 320

                                                                       
Query: 121 aaaggaagggaaagaggaaaggaagggaaagggagcagggcagaaaatggccgaccctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggaagggaaagaggaaaggaagggaaagggagcagggcagaaaatggccgaccctca 380

                                                                       
Query: 181 tgatgcacttgaaagaaatgatcattataaagcctatgattgaacaatgattatgtacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgcacttgaaagaaatgatcattataaagcctatgattgaacaatgattatgtacca 440

                                                                       
Query: 241 agaaacctgtcttaaaatatgtaaaaggcatatgcaaatatcacaccattttctatgggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaacctgtcttaaaatatgtaaaaggcatatgcaaatatcacaccattttctatgggg 500

                                                                       
Query: 301 aacttgagcatctatgaaatttcatatctatatactatctttagaagcaatgctcacaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacttgagcatctatgaaatttcatatctatatactatctttagaagcaatgctcacaag 560

                                                                       
Query: 361 atactaagaggctgctgccctaacagataatccaggggatgctaaggaagtgttaatgcc 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 atactaagaggctgctgccctaacagatgatccaggggatgctaaggaagtgttaatgcc 620

                                                                       
Query: 421 atgcatgtaccagccaaaagatataaaagagatggagaaacaagaataagcatctatggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcatgtaccagccaaaagatataaaagagatggagaaacaagaataagcatctatggt 680

                                                                       
Query: 481 ctcaggtatgcatcctaaaggtagtgtactggtagaaaatttaggcaggataacagatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcaggtatgcatcctaaaggtagtgtactggtagaaaatttaggcaggataacagatca 740

                                                                
Query: 541 ggatatggttgccttaaaaagggaacttatttacattcagtccccaagatgaa 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggatatggttgccttaaaaagggaacttatttacattcagtccccaagatgaa 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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