Query= MSMg01no535_d09.b1 MSMg01no535_d09.b1 CHROMAT_FILE:
MSMg01no535_d09.b1 PHD_FILE: MSMg01no535_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:57 2005
(650 letters)
>mm_chr6_86051514_86052564
Length = 1051
Score = 1208 bits (625), Expect = 0.0
Identities = 640/645 (99%), Gaps = 1/645 (0%)
Strand = Plus / Minus
Query: 7 gaattcttagttgattgagaaggtaccacatcagagacatgacctggatccaggcctcag 66
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gaattcttagttgagggagaaggtaccacatcagagacatgacctggatccaggcctcag 792
Query: 67 agtctaattctgaacactgctgtttcttgggcggctcacccactccattccacgtaacat 126
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 791 agtctaattctgaacactgctgtttcttgggcgcctcacccactccattccacgtaacat 732
Query: 127 ttattcatctccagacttacaatcgtctctgcagcactccactgtaagggtaccacaggg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttattcatctccagacttacaatcgtctctgcagcactccactgtaagggtaccacaggg 672
Query: 187 ctctcccacctccctcatgtggcagggctgagctgaccacaagtgacactgagggaggga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ctctcccacctccctcatgtggcagggctgagctgaccacaagtgacactgagggaggga 612
Query: 247 gcga-ccttccttcagtgctgttctgcctggcccgccagagtgaggcaggagggcaccac 305
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gcgacccttccttcagtgctgttctgcctggcccgccagagtgaggcaggagggcaccac 552
Query: 306 gtgggacttacagagagctggcttgtcctagaaccgcagcctctgtagtgtcaccacctc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtgggacttacagagagctggcttgtcctagaaccgcagcctctgtagtgtcaccacctc 492
Query: 366 tcctagcctggagaggccattcctcccagccagctttgacccatgccaacatggagacaa 425
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 491 tcctagcctggagaggccattcctcccagtcagctttgacccatgccaacatggagacaa 432
Query: 426 tcggcttgtagagggcacatctctgcctcaaaggtacacagccagggctggtcatgaatc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcggcttgtagagggcacatctctgcctcaaaggtacacagccagggctggtcatgaatc 372
Query: 486 tatccaaggctggatgagcacaccccttatcccaccaactcggacaccacattgtacatg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tatccaaggctggatgagcacaccccttatcccaccaactcggacaccacattgtacatg 312
Query: 546 ctcttggctgaccctcaccacagagctgcctgtaaaccagcattcctggagcttcatggg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctcttggctgaccctcaccacagagctgcctgtaaaccagcattcctggagcttcatggg 252
Query: 606 ctccaaggtcattgaccttccccaactaactgtcccttcccagtg 650
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctccaaggtcattgaccttccccaactaactgtcccttcccagtg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space: 666240
Effective search space used: 666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_d09.g1 MSMg01no535_d09.g1 CHROMAT_FILE:
MSMg01no535_d09.g1 PHD_FILE: MSMg01no535_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:57 2005
(687 letters)
>mm_chr6_85906875_85907961
Length = 1087
Score = 1303 bits (674), Expect = 0.0
Identities = 683/686 (99%)
Strand = Plus / Plus
Query: 1 agaagacagcatggggtaaaatagataggaccatatctattatagaacatatgtacataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagacagcatggggtaaaatagataggaccatatctattatagaacatatgtacataa 260
Query: 61 cttaatattgagccagaaaagaaaaagattctgatatatgctttaataaatgtcagagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaatattgagccagaaaagaaaaagattctgatatatgctttaataaatgtcagagac 320
Query: 121 ataattactaaaaccattcagtcacagaaaggcaagtattacatgatactggggctggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataattactaaaaccattcagtcacagaaaggcaagtattacatgatactggggctggag 380
Query: 181 agatggcttaatggttaagagcattggctgctcttgcagaagacttatgttcaattccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatggcttaatggttaagagcattggctgctcttgcagaagacttatgttcaattccta 440
Query: 241 gcacacaacagttcacaaccatttgtaattccagttacacgggacataatgcctacttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacacaacagttcacaaccatttgtaattccagttacacgggacataatgcctacttct 500
Query: 301 gtcctcacaaacaactggtatgtctgtggtgcacatatatacaagcaggcaaacattcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcctcacaaacaactggtatgtctgtggtgcacatatatacaagcaggcaaacattcat 560
Query: 361 acaaataaataagaataaaccttaaaaaaattactccacagataactgtaactatcctaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaataaataagaataaaccttaaaaaaattactccacagataactgtaactatcctaa 620
Query: 421 ctcatcaaagatgcttttttcctcctgcagcatacagtttacaaaaagccacatctagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcatcaaagatgcttttttcctcctgcagcatacagtttacaaaaagccacatctagcc 680
Query: 481 aaaatgcagaaaacaattgactgcgagctgctcagccctaactgatacatctaaatacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatgcagaaaacaattgactgcgagctgctcagccctaactgatacatctaaatacaa 740
Query: 541 ctctcccatctaaggctctgagaacagctcaggagagggaggcagaaatattataagagc 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctctcccatctaaggttctgagaacagctcaggagagggaggcagaaatattataagagc 800
Query: 601 tcaaggaccaggaggtcagctgcaagattatatttcatatgaatgacaaggaaggctaca 660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 801 tcaaggaccaggaggtcagctgcaagattatatttcatatgaatgtcaaggaaggctaca 860
Query: 661 acaaagaaatgtcaacactatgagtg 686
|||| |||||||||||||||||||||
Sbjct: 861 acaatgaaatgtcaacactatgagtg 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
