Query= MSMg01no535_h18.b1 MSMg01no535_h18.b1 CHROMAT_FILE:
MSMg01no535_h18.b1 PHD_FILE: MSMg01no535_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:19 2005
(702 letters)
>mm_chr6_62246261_62247362
Length = 1102
Score = 1193 bits (617), Expect = 0.0
Identities = 686/727 (94%), Gaps = 29/727 (3%)
Strand = Plus / Plus
Query: 5 gaattcaagtgttcccattagaaatgtaattaatagagtttagtaaacatttgaaaagtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtgttcccattagaaatgtaattaatagagtttagtaaacatttgaaaagtg 264
Query: 65 caagatctgttttgtgatatatggctttgaactgtgttaaaattgcagtcattgacaatg 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagatctattttgtgatatatggctttgaactgtgttaaaattgcagtcattgacaatg 324
Query: 125 cttagaaccataaagaggcatcactacagtctgtatctcccaggttcctatcattgacaa 184
||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 325 cttagaaccataaagagacatcactacggtctgtatctcccaggtacctatcattgacaa 384
Query: 185 tgtgcaacattttgaatttcaacatgccattgaaccctatagaaatgaattttatatttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgcaacattttgaatttcaacatgccattgaaccctatagaaatgaattttatatttt 444
Query: 245 aatcactgtccttgagaaacttgcccatttcaatgattatatttactacagtatggtata 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 aatcactgtccttgagaaacttgcccatttcaatcattatatttactacagtatggtata 504
Query: 305 agaaaataaccctaatcaacaaatcatttttataattgaaattatatttaactgaatata 364
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaaaataaccataaacaacaaatcatttttataattgaaattatatttaactgaatata 564
Query: 365 atattgttaatagtttatttgcggctttataaagcacaggtctgtagacacaccttcctt 424
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 atattgttaatagtttatttgaggcttgataaagcacaggtctgtagacacaccttcctt 624
Query: 425 cttcttttaagaattatttaaaaagcatatcacaaatattcctgggtatgcagttttgtt 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttcttttaagaattatttaaaaagcatatcacaaatattcctgggtatgcagttttgtt 684
Query: 485 ttaatcttagaatctgataagagcaaataaagtgaaaatcattatatatatatatatata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttaatcttagaatctgataagagcaaataaagtgaaaatcattatatatatatatatata 744
Query: 545 tatatatata----------------------------catttttcattatccattcatt 576
|||||||||| ||||||||||||||||||||||
Sbjct: 745 tatatatatatatatatatatatatatatatatatatacatttttcattatccattcatt 804
Query: 577 tgttgatgaacaactatgttgattgcaatatttgtcaatctttttttaaattttttt-at 635
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 805 tgttgatgaacaactatgttgattgcaatatttgtcaatctttttttaatttttttttat 864
Query: 636 ttttatttatttattttttaatatttgtcaatctgtcagaaagtaaaaactttatgttgt 695
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 865 ttttatttatttattttttaatatttgtcaatctgtcataaagtaaaaactttatgttgt 924
Query: 696 taatggt 702
|||||||
Sbjct: 925 taatggt 931
Score = 56.8 bits (29), Expect = 6e-12
Identities = 36/39 (92%), Gaps = 3/39 (7%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatatacat--ttttca 563
|||||||||||||||||||||||||||| || ||||||
Sbjct: 754 tatatatatatatatatatatatatata-atgattttca 717
Score = 56.8 bits (29), Expect = 6e-12
Identities = 36/39 (92%), Gaps = 3/39 (7%)
Strand = Plus / Minus
Query: 517 tgaaaatcat-tatatatatatatatatatatatatata 554
|||||| || ||||||||||||||||||||||||||||
Sbjct: 791 tgaaaa--atgtatatatatatatatatatatatatata 755
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 756 tatatatatatatatatatatatatata 729
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 758 tatatatatatatatatatatatatata 731
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 760 tatatatatatatatatatatatatata 733
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 762 tatatatatatatatatatatatatata 735
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 764 tatatatatatatatatatatatatata 737
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 766 tatatatatatatatatatatatatata 739
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 768 tatatatatatatatatatatatatata 741
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 770 tatatatatatatatatatatatatata 743
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 772 tatatatatatatatatatatatatata 745
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 774 tatatatatatatatatatatatatata 747
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 776 tatatatatatatatatatatatatata 749
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 778 tatatatatatatatatatatatatata 751
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 527 tatatatatatatatatatatatatata 554
||||||||||||||||||||||||||||
Sbjct: 780 tatatatatatatatatatatatatata 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 16
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no535_h18.g1 MSMg01no535_h18.g1 CHROMAT_FILE:
MSMg01no535_h18.g1 PHD_FILE: MSMg01no535_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:19 2005
(665 letters)
>mm_chr6_62365770_62366834
Length = 1065
Score = 675 bits (349), Expect = 0.0
Identities = 349/349 (100%)
Strand = Plus / Minus
Query: 1 catgtgtgtgtgcatgtttgtttgaggcacatacatgtgaaggctagaagatgtcagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 catgtgtgtgtgcatgtttgtttgaggcacatacatgtgaaggctagaagatgtcagtgg 290
Query: 61 atgttgtgaacatatttttattttttgaggcagggtttcattttggcttacactatcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atgttgtgaacatatttttattttttgaggcagggtttcattttggcttacactatcaac 230
Query: 121 tagagaagagtaattgagaaacagatccacttgctgggtctttcggagggcagacatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tagagaagagtaattgagaaacagatccacttgctgggtctttcggagggcagacatgct 170
Query: 181 atgtccctttttgagagcattccatagcctcagtaatagtgtcgggccttggaacctccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 atgtccctttttgagagcattccatagcctcagtaatagtgtcgggccttggaacctccc 110
Query: 241 tttgagatggatcccactttgggcctatcactagaccttctttttctcagacacctctac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tttgagatggatcccactttgggcctatcactagaccttctttttctcagacacctctac 50
Query: 301 atttccatccctgtaattctttcagacagaaagaattgtatcaaaggtg 349
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 atttccatccctgtaattctttcagacagaaagaattgtatcaaaggtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
