BAC Information

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BAC

Clone NameMSMg01-535O05
Chromosome6 (Build37)
Map Location 43,338,661 - 43,339,351
singlet/doubletsinglet
Overlap geneTpk1
Upstream geneTas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, LOC665747
Downstream geneLOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535O05.T7 (MSMg01no535_o05.b1)MSMg01-535O05.TJ (MSMg01no535_o05.g1)
ACCAG603232AG603233
length833771
length of high quality
(start - end)		220 (47 - 266)691 (75 - 765)
definitionCHROMAT_FILE: MSMg01no535_o05.b1 PHD_FILE: MSMg01no535_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:49 2005CHROMAT_FILE: MSMg01no535_o05.g1 PHD_FILE: MSMg01no535_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTTTTTTAGTCAAAAATACAGATTATCCATGATACAACCCTTA
TACCATAACAAGTTTAACCAACAGGAAGGCCCAAGTGAGGGTGCTTCAAT
CCCACTTAGAAGGGGAGACAAAATAATCATGGGAGGCAGAGGGAGGGATC
TGGGTAGGACGGGGAAGGGGAGAGGGGAGGGGTAAAGGGGACAGGATCAG
GTATAGGGGTGGGGTTGNNNGGGNGNGGGGGGNGTGGGGNNGTTGTGGTG
TTTGTGGTNTTGTTGGGGTGTGGGTGTTTTTTTGTGTTTTTGTTTGTTGG
GTTTGATTTTTTGGTTGTTTTTGTTTTTTTTTATTTCTGTGTTTTTTGTT
TTAGTTTATTGTTATTGTTTATTAAGATATTGTTGAGGATAGGAGATGGG
TATGTTTGGGTGTTTTTGTTATGTGGATTTATGTTTTTTTACATATTTTT
TTTTTTGTGTTTTTTATTTGTAGTGTTTTATTTTTTGTGATATTTGTAAT
TAATTTTATGAGTGTTTTTTATTTTTGTATGGTGTATGTTTTTTTTTATT
ATGGGTTAGTTTGTATTGTTTATTTTTTTTGTATGTATATATTTAAAGAA
TATTTGTATATTATTTTATTTAAATTTGTCTTGTGTATTTTTTTTTTCTG
CTTTTGATTGTACTATATTATACACTATCTCTTCATCATTTCTAGGTCGA
CCATTATTACCTCTGCCTCATCTTTATCTAACTCCATATTTCCACGTTCG
CCCTTTCTCTCTCCTTCCTTCTTCATTTCTTTT

ATTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATACAACTGTAGTATTCTAAAAAGA
AAAGCAGCAAACTACATATATGTGGACTGTCCAGTCTTGTTTAGAGTACC
TTGCCTAGCTCTTAGCTAGACATTTGAAGATTGTCATTGACCTGTGGCTC
CTACACAGAACACTGTGATGGAGTAAGGGAAGCTGGTGGAAGGGGAAAAC
CCAGCAAAGCTCATTGTACAAATGTATGAAACGGTCAAAGAATAAAAAAA
TGATGAAAATAAAAGGAATTCACAATAAAGCCATGATACTGATCTCTAGC
ATGTAGCTTATGGTAGAAACATTAGACTCAGATCCAACCGTTTCAGGAAT
ACAATAAAATCAAATGTAGAAAAACATCCTGCAGAGTTCAGGAGACAGGA
AGGGTGGGTGTTTTGTCCTGCTGATACTGTCTTTTCCCACAATCTTTTTG
GGCATGCAATCACTACTTACCTATTAAGGAATACTTGGATTTATTCTATA
ACACTAAATATTTTTAAATTGCTGTCTTACAACCAATACAAATATAACAA
AACTTTTGTAAATAGTACCTTATTCATCTCTACATTTTTGCCATTTGATC
TTTGACTATGTGCAATGCTGGCCACACACATAATAAAAGTACTATGAATA
TGTTATCTTTTATTTAATTTTATATTTCTGTACTTTATATTATTGCTTCC
GTTCTAATTGTTTGTGGTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_o05.g1 MSMg01no535_o05.g1 CHROMAT_FILE:
MSMg01no535_o05.g1 PHD_FILE: MSMg01no535_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:50 2005
         (691 letters)



>mm_chr6_43338461_43339551
          Length = 1091

 Score = 1321 bits (683), Expect = 0.0
 Identities = 689/691 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacaactgtagtattctaaaaagaaaagcagcaaactacatatatgtggactgtccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacaactgtagtattctaaaaagaaaagcagcaaactacatatatgtggactgtccag 260

                                                                       
Query: 61  tcttgtttagagtaccttgcctagctcttagctagacatttgaagattgtcattgacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgtttagagtaccttgcctagctcttagctagacatttgaagattgtcattgacctg 320

                                                                       
Query: 121 tggctcctacacagaacactgtgatggagtaagggaagctggtggaaggggaaaacccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctcctacacagaacactgtgatggagtaagggaagctggtggaaggggaaaacccag 380

                                                                       
Query: 181 caaagctcattgtacaaatgtatgaaacggtcaaagaataaaaaaatgatgaaaataaaa 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 caaagctcattgtacaaatgtatgaaatggtcaaagaataaaaaaatgatgaaaataaaa 440

                                                                       
Query: 241 ggaattcacaataaagccatgatactgatctctagcatgtagcttatggtagaaacatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaattcacaataaagccatgatactgatctctagcatgtagcttatggtagaaacatta 500

                                                                       
Query: 301 gactcagatccaaccgtttcaggaatacaataaaatcaaatgtagaaaaacatcctgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactcagatccaaccgtttcaggaatacaataaaatcaaatgtagaaaaacatcctgcag 560

                                                                       
Query: 361 agttcaggagacaggaagggtgggtgttttgtcctgctgatactgtcttttcccacaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttcaggagacaggaagggtgggtgttttgtcctgctgatactgtcttttcccacaatc 620

                                                                       
Query: 421 tttttgggcatgcaatcactacttacctattaaggaatacttggatttattctataacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttgggcatgcaatcactacttacctattaaggaatacttggatttattctataacac 680

                                                                       
Query: 481 taaatatttttaaattgctgtcttacaaccaatacaaatataacaaaacttttgtaaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatatttttaaattgctgtcttacaaccaatacaaatataacaaaacttttgtaaata 740

                                                                       
Query: 541 gtaccttattcatctctacatttttgccatttgatctttgactatgtgcaatgctggcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtaccttattcatctctacatttttgccatttgatctttgactatgtgcaatgctggcca 800

                                                                       
Query: 601 cacacataataaaagtactatgaatatgttatcttttatttaattttatatttctgtact 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 801 cacacataataaaagtactatgaatatgttatcttttatttaattttatatttccgtact 860

                                          
Query: 661 ttatattattgcttccgttctaattgtttgt 691
           |||||||||||||||||||||||||||||||
Sbjct: 861 ttatattattgcttccgttctaattgtttgt 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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