Query= MSMg01no536_b01.b1 MSMg01no536_b01.b1 CHROMAT_FILE:
MSMg01no536_b01.b1 PHD_FILE: MSMg01no536_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:04 2005
(600 letters)
>mm_chr6_96796949_96797948
Length = 1000
Score = 366 bits (189), Expect = e-105
Identities = 205/213 (96%), Gaps = 6/213 (2%)
Strand = Plus / Plus
Query: 8 gaattcatttct---tttctttgtagttcctggcgtcacagcactctgtggtgcattctg 64
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatttctcagttt---tgtagttcctggcgtcacagcactctgtggtgcattctg 264
Query: 65 atttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcgtgtgtggtgtgaggc 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 atttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtgaggc 324
Query: 125 agtctctgatttatccttgtgtatggtgtgaagtgatttatccttgtgtgtggtgtgaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtctctgatttatccttgtgtatggtgtgaagtgatttatccttgtgtgtggtgtgaag 384
Query: 185 tgatttatcctcgtgtgtggtgtgaggcagtct 217
||||||||||| |||||||||||||||||||||
Sbjct: 385 tgatttatccttgtgtgtggtgtgaggcagtct 417
Score = 281 bits (145), Expect = 1e-79
Identities = 148/149 (99%)
Strand = Plus / Plus
Query: 251 tctgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtg 320
Query: 311 aggcagtctctgatttatccttgtgtgtggtgtgaagtgatttatccttgtgtgtggtgt 370
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 aggcagtctctgatttatccttgtgtatggtgtgaagtgatttatccttgtgtgtggtgt 380
Query: 371 gaagtgatttatccttgtgtgtggtgtga 399
|||||||||||||||||||||||||||||
Sbjct: 381 gaagtgatttatccttgtgtgtggtgtga 409
Score = 240 bits (124), Expect = 2e-67
Identities = 146/158 (92%), Gaps = 11/158 (6%)
Strand = Plus / Plus
Query: 217 tctgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcgtgtgtggtgtg 276
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tctgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtg 320
Query: 277 aggcagtctctgatttatcctcatgtgt--ggtgtgaggcagtctctgatttatccttgt 334
||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||
Sbjct: 321 aggcagtctctgatttatcct--tgtgtatggtgtga---agt----gatttatccttgt 371
Query: 335 gtgtggtgtgaagtgatttatccttgtgtgtggtgtga 372
||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtgtggtgtgaagtgatttatccttgtgtgtggtgtga 409
Score = 234 bits (121), Expect = 1e-65
Identities = 144/155 (92%), Gaps = 7/155 (4%)
Strand = Plus / Plus
Query: 429 tgatttatccttgtgtgtggtgtga---ag----tgatttatcctcgtgtgtggtgtgag 481
||||||||||| ||||||||||||| || |||||||||||| |||||||||||||
Sbjct: 263 tgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtgag 322
Query: 482 gcagtctctgatttatcctcgtgtgtggtgtgaagtgatttatccttgtgtgtggtgtga 541
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 323 gcagtctctgatttatccttgtgtatggtgtgaagtgatttatccttgtgtgtggtgtga 382
Query: 542 agtgatttatccttgtgtgtggtgtgaggcagtct 576
|||||||||||||||||||||||||||||||||||
Sbjct: 383 agtgatttatccttgtgtgtggtgtgaggcagtct 417
Score = 223 bits (115), Expect = 4e-62
Identities = 138/149 (92%), Gaps = 7/149 (4%)
Strand = Plus / Plus
Query: 285 tctgatttatcctcatgtgtggtgtgaggcagtctctgatttatccttgtgtgtggtgtg 344
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tctgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtg 320
Query: 345 a---agt----gatttatccttgtgtgtggtgtgaagtgatttatccttgtgtgtggtgt 397
| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 aggcagtctctgatttatccttgtgtatggtgtgaagtgatttatccttgtgtgtggtgt 380
Query: 398 gaagtgatttatccttgtgtgtggtgtga 426
|||||||||||||||||||||||||||||
Sbjct: 381 gaagtgatttatccttgtgtgtggtgtga 409
Score = 209 bits (108), Expect = 5e-58
Identities = 136/152 (89%), Gaps = 14/152 (9%)
Strand = Plus / Plus
Query: 456 tgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcgtgtgtggtgtga- 514
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263 tgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtgag 322
Query: 515 --agt----gatttatccttgtgtgtggtgtgaagtgatttatccttgtgtgtggtgtga 568
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 323 gcagtctctgatttatccttgtgtatggtgtgaagtgatttatccttgtgtgtggtgtga 382
Query: 569 ggcagtctctgatttatccttgtgtgtggtgt 600
||| ||||||||||||||||||||||
Sbjct: 383 ---agt----gatttatccttgtgtgtggtgt 407
Score = 203 bits (105), Expect = 3e-56
Identities = 142/161 (88%), Gaps = 14/161 (8%)
Strand = Plus / Plus
Query: 185 tgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcgtgtgtggtgtgag 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 tgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtgag 322
Query: 245 gcagtctctgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgt 304
||||||||||||||||||| |||| |||||||| ||| |||||||||| |||||
Sbjct: 323 gcagtctctgatttatccttgtgtatggtgtga---agt----gatttatccttgtgtgt 375
Query: 305 ggtgtgaggcagtctctgatttatccttgtgtgtggtgtga 345
||||||| ||| ||||||||||||||||||||||||
Sbjct: 376 ggtgtga---agt----gatttatccttgtgtgtggtgtga 409
Score = 192 bits (99), Expect = 9e-53
Identities = 136/155 (87%), Gaps = 14/155 (9%)
Strand = Plus / Plus
Query: 348 tgatttatccttgtgtgtggtgtga---ag----tgatttatccttgtgtgtggtgtga- 399
||||||||||| ||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 263 tgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtgag 322
Query: 400 --ag----tgatttatccttgtgtgtggtgtgaagtgatttatccttgtgtgtggtgtga 453
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 323 gcagtctctgatttatccttgtgtatggtgtgaagtgatttatccttgtgtgtggtgtga 382
Query: 454 agtgatttatcctcgtgtgtggtgtgaggcagtct 488
||||||||||||| |||||||||||||||||||||
Sbjct: 383 agtgatttatccttgtgtgtggtgtgaggcagtct 417
Score = 188 bits (97), Expect = 1e-51
Identities = 131/149 (87%), Gaps = 14/149 (9%)
Strand = Plus / Plus
Query: 319 tctgatttatccttgtgtgtggtgtga---ag----tgatttatccttgtgtgtggtgtg 371
||||||||||||| ||||||||||||| || ||||||||||| |||||||||||
Sbjct: 261 tctgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtg 320
Query: 372 a---ag----tgatttatccttgtgtgtggtgtgaagtgatttatccttgtgtgtggtgt 424
| || |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 aggcagtctctgatttatccttgtgtatggtgtgaagtgatttatccttgtgtgtggtgt 380
Query: 425 gaagtgatttatccttgtgtgtggtgtga 453
|||||||||||||||||||||||||||||
Sbjct: 381 gaagtgatttatccttgtgtgtggtgtga 409
Score = 168 bits (87), Expect = 8e-46
Identities = 141/169 (83%), Gaps = 21/169 (12%)
Strand = Plus / Plus
Query: 158 tgatttatccttgtgtgtggtgtga---ag----tgatttatcctcgtgtgtggtgtgag 210
||||||||||| ||||||||||||| || |||||||||||| |||||||||||||
Sbjct: 263 tgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtgag 322
Query: 211 gcagtctctgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcgtgtgt 270
||||||||||||||||||| |||| |||||||| ||| |||||||||| ||||||
Sbjct: 323 gcagtctctgatttatccttgtgtatggtgtga---agt----gatttatccttgtgtgt 375
Query: 271 ggtgtgaggcagtctctgatttatcctcatgtgtggtgtgaggcagtct 319
||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 376 ggtgtga---agt----gatttatccttgtgtgtggtgtgaggcagtct 417
Score = 147 bits (76), Expect = 2e-39
Identities = 127/154 (82%), Gaps = 21/154 (13%)
Strand = Plus / Plus
Query: 402 tgatttatccttgtgtgtggtgtga---ag----tgatttatccttgtgtgtggtgtga- 453
||||||||||| ||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 263 tgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcatgtgtggtgtgag 322
Query: 454 --ag----tgatttatcctcgtgtgtggtgtgaggcagtctctgatttatcctcgtgtgt 507
|| ||||||||||| |||| |||||||| || ||||||||||| ||||||
Sbjct: 323 gcagtctctgatttatccttgtgtatggtgtga---ag----tgatttatccttgtgtgt 375
Query: 508 ggtgtgaagtgatttatccttgtgtgtggtgtga 541
||||||||||||||||||||||||||||||||||
Sbjct: 376 ggtgtgaagtgatttatccttgtgtgtggtgtga 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 13
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_b01.g1 MSMg01no536_b01.g1 CHROMAT_FILE:
MSMg01no536_b01.g1 PHD_FILE: MSMg01no536_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:04 2005
(471 letters)
>mm_chr6_96981374_96982244
Length = 871
Score = 880 bits (455), Expect = 0.0
Identities = 467/471 (99%), Gaps = 1/471 (0%)
Strand = Plus / Minus
Query: 1 atgacagtagcaaaattacagttatgaagtagaaaatgaaaaaaaatcacaacatgatga 60
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 771 atgacagtagcaaaattacagttatgaagtagaaaatg-aaaataatcacaacatgatga 713
Query: 61 actgtattcaagggtcacagcattaggaaagttgagaactagttctctggcatgtgtggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 actgtattcaagggtcacagcattaggaaagttgagaactagttctctggcatgtgtggt 653
Query: 121 tgggacatgaaataattcaggtattggaaaccagtcctacttaccgttagggagcagtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgggacatgaaataattcaggtattggaaaccagtcctacttaccgttagggagcagtaa 593
Query: 181 ctgtagctattatagaacacacactttgggatacgaaggaggtcatattctcagtgttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ctgtagctattatagaacacacactttgggatacgaaggaggtcatattctcagtgttaa 533
Query: 241 gcaggtaggtgctagagtgtgcgtttataactccactcctcttgatggctgatcctcgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gcaggtaggtgctagagtgtgcgtttataactccactcctcttgatggctgatcctcgtc 473
Query: 301 aaaccatggcattgctgtgtccaaatctcctttgtaatatggggataatgggatggccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaaccatggcattgctgtgtccaaatctcctttgtaatatggggataatgggatggccct 413
Query: 361 tctcaatgtgtggggacgatgaaatgaagccacttgtagatggctcttggagaagagtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tctcaatgtgtggggacgatgaaatgaagccacttgtagatggctcttggagaagagtca 353
Query: 421 gacattgcttgcttatggaatcagcagtggctcctgctgttgcgaattcta 471
||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 352 gacattgcttgcttatggaatcagcagtggcccccgctgttgcgaattcta 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
