BAC Information

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BAC

Clone NameMSMg01-536C01
Chromosome6 (Build37)
Map Location 55,990,122 - 55,990,708
singlet/doubletsinglet
Overlap genenone
Upstream geneGars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs
Downstream geneLOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536C01.T7 (MSMg01no536_c01.b1)MSMg01-536C01.TJ (MSMg01no536_c01.g1)
ACCAG603416AG603417
length745744
length of high quality
(start - end)
598 (51 - 648)587 (78 - 664)
definitionCHROMAT_FILE: MSMg01no536_c01.b1 PHD_FILE: MSMg01no536_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:09 2005CHROMAT_FILE: MSMg01no536_c01.g1 PHD_FILE: MSMg01no536_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTTTTAGATTATGACGTCTTATATGTCTGAGTTTCTCTT
TTCAATTATTCCTTTGGCTTCGTAACTGAGACATCATTGCATAGCACAAT
GTTCAGTGATTTGCCCTACAATCCCATGGTAGTTTTTTAGTGCAGGAAAT
TAGACATTAGAAAATTACCCATATTCATTTGAGTTAATTTTTGTTGTTGG
TATGAATTAGAAGGCTCAACTCTATTCTTCTAATTGTGGTTATTTTGGCT
GCTATAATGCAGCATTTGTCTGTATTTCTGTTCTTTTCTAATTGTATTAC
CTTTTTTTCTTTGTTAAGTAAACTCTAAGTGTATGCGTATTTTTCTGTCA
AGCTACTCTAGTTTACTTCTTTGGTCTCTATGTCCAAATGCTATAGACTG
CCTTCTTGATTGTAGCTTCCCAGTGGGTTATAAATAAAGAAACGTAGGCT
TTTCACCTTTTTTCTTTTTCAGTATTGTCTCAGCTACTCTTGATCTTTGA
ATTTCAAGGAGAAGTTTAGAGACAGCTTTTTGATTTCCACATAAAGGAAT
AGGAGAGACTTTGGTGGAAGTTTGGTTCATTTTAAAATTAAATTGGAGAC
TATCGCTAACAATATCTTTTGCAATAAGATGAATGTATTTTTATTTATCC
GGGCATCCTCTAATTCCAACAGTGTGCTGGAGCCTCAAACATTGA
CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTCTTTCACAGAGCCTCAGTA
CTTCCTCTCTCCACCACCTGGAGCTGCTCTTCCCTCCATTCATTACTCCC
CCTTTACCTGATACACTCTTGAGCTCCCCACTAGAACATTATTCCTTTCA
GCAAGGTTTTCCTCACTATGCCTCTTCCCCAGATAGGGTCAGATTCTTCT
TTTATGAGCTCTCAGAACCTCTGTGTAGCGAGCACAATTGTGTTTTGATA
TCATAGAGTTATTATTTTTTGACTGATATCTGTCCAGTTGGCAGATTAGA
AACTCTGTTGTCTAATCTACTTGATCTGACAGGTAACACTTAGTCTGGCA
TGTATTAAGTTAAAAGACCCAGAATATTCTCTCCTTTGTTAACTCCCGTG
TGCTTTGCACTGAAGTTGAGGAACACCTGGATTGGGTCTTACTGTATCCA
CTGGTTTATGCGGCTAGTCCTGCTGTTGAGGGTTTGCTGAGAGAGCTTAT
GTCCTAAAAACTATTAGGCAGATCAAACATACTCCCTTTCCTTTAAAATA
ATCTGGGAGTGGTAGCAACTTCATTTTAGGGTTTGGTGAAATCTGGTATT
GGTTCTTTGCAATTCCTGTCATTGAGGCAATTCCTTAAGGTAATAAAAGC
TATAAATATTTTTACTATTGCCAAACGTATATTGCTTCTTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_c01.g1 MSMg01no536_c01.g1 CHROMAT_FILE:
MSMg01no536_c01.g1 PHD_FILE: MSMg01no536_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:09 2005
         (587 letters)



>mm_chr6_55989922_55990908
          Length = 987

 Score = 1106 bits (572), Expect = 0.0
 Identities = 584/588 (99%), Gaps = 2/588 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctctttcacagagcctcagtacttcctctctccaccacctggagctgctcttccctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ccctctttcacagagcctcagtacttcctctctccaccacctggagctgctcttccctcc 728

                                                                       
Query: 61  attcattactccccctttacctgatacactcttgagctccccactagaacattattcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 attcattactccccctttacctgatacactcttgagctccccactagaacattattcctt 668

                                                                       
Query: 121 tcagcaaggttttcctcactatgcctcttccccagatagggtcagattcttcttttatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tcagcaaggttttcctcactatgcctcttccccagatagggtcagattcttcttttatga 608

                                                                       
Query: 181 gctctcagaacctctgtgtagcgagcacaattgtgttttgatatcatagagttattattt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 607 gctctcagaacctctgtgtagccagcacaattgtgttttgatatcatagagttattattt 548

                                                                       
Query: 241 tttgactgatatctgtccagttggcagattagaaactctgttgtctaatctacttgatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tttgactgatatctgtccagttggcagattagaaactctgttgtctaatctacttgatct 488

                                                                       
Query: 301 gacaggtaacacttagtctggcatgtattaagttaaaagacccagaatattctctcct-t 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 487 gacaggtaacacttagtctggcatgtattaagttaaaagacccagaatattctct-ctgt 429

                                                                       
Query: 360 tgttaactcccgtgtgctttgcactgaagttgaggaacacctggattgggtcttactgta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgttaactcccgtgtgctttgcactgaagttgaggaacacctggattgggtcttactgta 369

                                                                       
Query: 420 tccactggtttatgcggctagtcctgctgttgagggtttgctgagagagcttatgtccta 479
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 368 tccactggtttatgcggctagtcctgctgttgaggatttgctgagagagcttatgtccta 309

                                                                       
Query: 480 aaaactattaggcagatcaaacatactccctttcctttaaaataatctgggagtggtagc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaaactattaggcagatcaaacatactccctttcctttaaaataatctgggagtggtagc 249

                                                           
Query: 540 aacttcattttagggtttggtgaaatctggtattggttctttgcaatt 587
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aacttcattttagggtttggtgaaatctggtattggttctttgcaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)