Query= MSMg01no536_j06.b1 MSMg01no536_j06.b1 CHROMAT_FILE:
MSMg01no536_j06.b1 PHD_FILE: MSMg01no536_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:44 2005
(580 letters)
>mm_chr6_96349046_96350027
Length = 982
Score = 1079 bits (558), Expect = 0.0
Identities = 568/572 (99%), Gaps = 2/572 (0%)
Strand = Plus / Minus
Query: 11 attctcagcatgcatggagaaggaagattatccatgaccagagagcaaaataatgagaaa 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 attctcagcatgcatggagaaggaagattatccatgaccagagagcaaaataatgagaaa 723
Query: 71 caagaccaaaggaggcctttgagcttaagcaataaggctttactcacagtaactgtggag 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 caagaccaaaggaggcctttgagcttaagcaataaggctttactcacagtaactgtggag 663
Query: 131 aaaaaaatgaatttaaaacactaagaatgtttcaatcatctcatagttatcag--aaaaa 188
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 662 aaaaaaatgaatttaaaacactaagaatgtttcaatcatctcatagttatcagaaaaaaa 603
Query: 189 aaattaaaataccctccccaacccacccccaaagaaaaacagaaacaacatacccattac 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaattaaaataccctccccaacccacccccaaagaaaaacagaaacaacatacccattac 543
Query: 249 aacaaatgtcctccaggcacaccaagtgagtcagaggagacattcaaaactgtccttcac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aacaaatgtcctccaggcacaccaagtgagtcagaggagacattcaaaactgtccttcac 483
Query: 309 tccagcaaatgaacagatgtaatgagatttcaccaacaggccttgctccagggcacagga 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tccagcaaatgaacagatgtaatgagatttcaccaacaggccttgctccagggcacagga 423
Query: 369 ggaaggggtgagctgtcctaattggaagtttatatggtattcagttcaggctggaaagca 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggaaggggtgagctgtcctaattggaagtttatatggtattcagttcaggctggaaagca 363
Query: 429 ttcatgattaaaataatttgcccagatatatctttaaagcacttaaaatgcatatggtac 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttcatgattaaaataatttgcccagatatatctttaaagcacttaaaatgcatatggtac 303
Query: 489 catcaggagacacttcctacccaccaggagaagagggcttggggactgaagaggtgttga 548
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 catcaggggacacttccaacccaccaggagaagagggcttggggactgaagaggtgttga 243
Query: 549 agaggctctccctgagcattcctttggccaaa 580
||||||||||||||||||||||||||||||||
Sbjct: 242 agaggctctccctgagcattcctttggccaaa 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 982
Length adjustment: 10
Effective length of query: 570
Effective length of database: 972
Effective search space: 554040
Effective search space used: 554040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_j06.g1 MSMg01no536_j06.g1 CHROMAT_FILE:
MSMg01no536_j06.g1 PHD_FILE: MSMg01no536_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:44 2005
(479 letters)
>mm_chr6_96192171_96193049
Length = 879
Score = 880 bits (455), Expect = 0.0
Identities = 473/479 (98%)
Strand = Plus / Plus
Query: 1 acccaagaactatgaatactctgacctaccttccttaaaaagccctcattctcagagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccaagaactatgaatactctgacctaccttccttaaaaagccctcattctcagagtga 260
Query: 61 cctcagcaggcttttgtagatgtcaactgagtctactgggcagagagaaagatgcctgaa 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 261 cctcagcaggcttttgtagatgtcacctgagtctactgggcagagagaaagatggctgaa 320
Query: 121 gtgtcctaggttagattccatatgactgtagagttacacaaccatggatcagtatgtaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtcctaggttagattccatatgactgtagagttacacaaccatggatcagtatgtaga 380
Query: 181 acattgtacccagactgtcctttccttcttcctctaagatccttagctttaaagtctgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattgtacccagactgtcctttccttcttcctctaagatccttagctttaaagtctgag 440
Query: 241 aataatgaaaggaagacaaagatcagtgtccagcagtacttggttaagatcctacttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataatgaaaggaagacaaagatcagtgtccagcagtacttggttaagatcctacttcct 500
Query: 301 cgggctgccaaactgttgcatgatagataggtgacactggcatgccccgagttggacatg 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 cgggctgccaaactgttgcatgatggataggtgacactggcatgccccgagttggacatg 560
Query: 361 attttaatgaactcacaaaaataccttttcagcccagctgttcctactcatgatttctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttaatgaactcacaaaaataccttttcagcccagctgttcctactcatgatttctgc 620
Query: 421 ccatgattaactcagttttggaaccacccacaacatgtgacaggaagaaagaaggttcc 479
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 621 ccatgattaactcagttttggaaccacccacaacatgtgatgggaaggaagaaggttcc 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
