Query= MSMg01no536_k07.b1 MSMg01no536_k07.b1 CHROMAT_FILE:
MSMg01no536_k07.b1 PHD_FILE: MSMg01no536_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:49 2005
(608 letters)
>mm_chr6_144597893_144598901
Length = 1009
Score = 1094 bits (566), Expect = 0.0
Identities = 599/610 (98%), Gaps = 2/610 (0%)
Strand = Plus / Minus
Query: 1 actggtggtaaaggggagtccctgcattgatgtggcttcttcgggggtcccgcgaaggga 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 736 actggtggtaaaggggagtccctgcattggtgtggcttcttcgggggtcccgcaaaggga 677
Query: 61 agtgattttgtggtggtcacattttagtattgtagtttctatgtttcctttccccactat 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 676 agtgattttgtggtggtcacattttagtattgtagtttctatgttccctttccccactat 617
Query: 121 taatgttgtacactcattttgagcctaaaaatgttttaaaacatgttccataatcttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 taatgttgtacactcattttgagcctaaaaatgttttaaaacatgttccataatcttaaa 557
Query: 181 aagt-aaaaaaaaaaattataattattcttggaaacaaatgccgaccacatgttacatca 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aagtaaaaaaaaaaaattataattattcttggaaacaaatgccgaccacatgttacatca 497
Query: 240 tgcataattctcccaggcttccctcctctttccaaacaaagggtctagcctcctcttagt 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgaataattctcccaggcttccctcctctttccaaacaaagggtctagcctcctcttagt 437
Query: 300 cc-ttttttttttttctttctgtttcttagtttttaggacagggtcttatacagtagccc 358
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 436 cctttttttttttttctttctgtttcttagtttttaggacagggtcttatactgtagccc 377
Query: 359 aggctaatccagaattcactatttagccaacgttgacctcaaaatccaccatcctcctgc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aggctaatccagaattcactatttagccaacgttgacctcaaaatccaccatcctcctgc 317
Query: 419 ctcagcttcctaatgactgaaatcacaggtccctttgactcattataaacttccatcctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctcagcttcctaatgactgaaatcacaggtccctttgactcattataaacttccatcctc 257
Query: 479 tggctttctccctgccagccacactggttggcttgatttctgtccaaatgataggatggc 538
|||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 256 tggcttgctccccgccagccacactggctggcttgatttccgtccaaatgataggatggc 197
Query: 539 tcctatgttagagccctcgaatttactcctccacgcctgctaataagttacctgtttcct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tcctatgttagagccctcgaatttactcctccacgcctgctaataagttacctgtttcct 137
Query: 599 gatcccccac 608
||||||||||
Sbjct: 136 gatcccccac 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space: 597402
Effective search space used: 597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_k07.g1 MSMg01no536_k07.g1 CHROMAT_FILE:
MSMg01no536_k07.g1 PHD_FILE: MSMg01no536_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:49 2005
(340 letters)
>mm_chr6_144429028_144429767
Length = 740
Score = 634 bits (328), Expect = 0.0
Identities = 334/336 (99%)
Strand = Plus / Plus
Query: 1 ttctttttttttctttctttcctttcatgacttgaccataaagataaaactggggtgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctttttttttctttctttcctttcatgacttgaccataaagataaaactggggtgctt 260
Query: 61 taattaccatccagagccagagccttgccctttgatatggaaatcccacttgtgccccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattaccatccagagccagagccttgccctttgatatggaaatcccacttgtgccccca 320
Query: 121 cctcttctctgccccttcctccactttcccagcaggaattttaagtagctttgtccaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcttctctgccccttcctccactttcccagcaggaattttaagtagctttgtccaacc 380
Query: 181 agcttatagtgacaacaagagagccaagcatagctcctggtaaggtctgagtcctcctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttatagtgacaacaagagagccaagcatagctcctggtaaggtctgagtcctcctgg 440
Query: 241 cagaactgagggcaggacagaatggagaagagataaacaggaaggacaggacaggataga 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 cagaactgagggcaggacagaatggagaggagataaacaggaaggacaggacaggataga 500
Query: 301 atagggtagggtagggtagggtagggcagggtaggg 336
|||||||||||||||||||||||||| |||||||||
Sbjct: 501 atagggtagggtagggtagggtagggtagggtaggg 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
