BAC Information

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BAC

Clone NameMSMg01-536M14
Chromosome6 (Build37)
Map Location 18,992,635 - 18,993,272
singlet/doubletsinglet
Overlap geneLOC626180
Upstream geneAsz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536M14.T7 (MSMg01no536_m14.b1)MSMg01-536M14.TJ (MSMg01no536_m14.g1)
ACCAG603914AG603915
length766793
length of high quality
(start - end)		637 (47 - 683)568 (78 - 645)
definitionCHROMAT_FILE: MSMg01no536_m14.b1 PHD_FILE: MSMg01no536_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:59 2005CHROMAT_FILE: MSMg01no536_m14.g1 PHD_FILE: MSMg01no536_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTAAATCACACACACATATAGGCATATATACATATTTCCTTG
CTCTTAATCCCTTGTCACTCCCCTTCCATGTTTGATATTCCCATTTTATA
CCCCACAAGTCCAACACCCTATTTCACCCATAACTATCTATTCTATTTCT
CCCCAGTCCTCTACTCTCTGTCTAACCTCTATGCTTCTATGGATTGTATC
TCACTTATTAGTATCTGTAGGGCTAACAGCCATATGTAAGCAATGCATAC
CTTATTTGTTTGTTTTTCTGGGTCTGGGTTACATCACTCAGGATGCTGAG
GTACATGCAAAATAAAAGTGACAGGAAAGAGTTTATTGTGATATGTCATG
TCACACTTGGTAATATTTATTTCCTAAAATTGATTTGAAAATGTTTCTTT
CTACTGTACATAATGCAGAACAAGTTTCCAGCCAACTAAAATAATATTTT
GAATTTTCAGCAAGTTTAAGAACAAAAGCTCAAAAGTCAAAATTTTCAGC
TAAATCAATCTGAGAGACATCTTTTTCCAAGTGATCTGAAGTGATTTAAT
GGCATTAAGTTAAAATTTAGACTTGGAATGATAAATGCATCATTCATTTA
GTTGTACTCCAAAAATCTACTTTCATATTCCTAGTCTGAACTATTTCCTC
TGTAGTTTCATCCTGGAGCTATTGTCCTCAGATTATCTAGTTCCCAAGTT
GGACTATTGTATCAGA

NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGT
AAATCAAAACAACCTTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCTGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGCACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATG
CCCCTCCCTTAGAAGTGGGAACAAATACCCATGGAAGGAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_m14.b1 MSMg01no536_m14.b1 CHROMAT_FILE:
MSMg01no536_m14.b1 PHD_FILE: MSMg01no536_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:59 2005
         (637 letters)



>mm_chr6_18992432_18993470
          Length = 1039

 Score = 1096 bits (567), Expect = 0.0
 Identities = 620/639 (97%), Gaps = 6/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatttaaatcaca--cacacatataggcatatatacatatttccttgctcttaa 61
           |||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 ggaattcatttaaatctcaaacacacatataggcatatatacagatttccttgctcttaa 263

                                                                       
Query: 62  tcccttgtcactccccttccatgtttgatattcccattttataccccacaagtccaacac 121
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 tcccttgtcactccccttccatgtttgatcttcccattttataccccacaagtccaacac 323

                                                                       
Query: 122 cctatttcacccataactatctattctatttctccccagtcctctactctctgtctaacc 181
           ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||
Sbjct: 324 cctatttcacccataactatctattctatttctccctggtcttctactctctgtctaacc 383

                                                                       
Query: 182 tctatgcttctatggattgtatctcacttattagtatctgtagggctaacagccatatgt 241
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 tctatgcttctatggattgtatctcacttattagtatctgtatggctaacagccatatgt 443

                                                                       
Query: 242 aagcaa-tgcataccttatttgtttgtttttctgggtctgggttacatcactcaggatgc 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagcaaatgcataccttatttgtttgtttttctgggtctgggttacatcactcaggatgc 503

                                                                       
Query: 301 tgaggtacatgcaaaataaaagtgacaggaaagagtttattgtgatatgtc--atgtcac 358
           ||||||||||||||||||||||||||| ||| ||||| |||||||||||||  | |||||
Sbjct: 504 tgaggtacatgcaaaataaaagtgacaagaacgagttcattgtgatatgtcgga-gtcac 562

                                                                       
Query: 359 acttggtaatatttatttcctaaaattgatttgaaaatgtttctttctactgtacataat 418
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 563 acttggtaatatttatttcctaaaattgatctgaaaatgtttctttctactgtacataat 622

                                                                       
Query: 419 gcagaacaagtttccagccaactaaaataatattttgaattttcagcaagtttaagaaca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcagaacaagtttccagccaactaaaataatattttgaattttcagcaagtttaagaaca 682

                                                                       
Query: 479 aaagctcaaaagtcaaaattttcagctaaatcaatctgagagacatctttttccaagtga 538
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 683 aaagctcaaaagtcaaaattttcagctaaatcaatctgagtgacatctttttccaagtga 742

                                                                       
Query: 539 tctgaagtgatttaatggcattaagttaaaatttagacttggaatgataaatgcatcatt 598
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tctgaaatgatttaatggcattaagttaaaatttagacttggaatgataaatgcatcatt 802

                                                  
Query: 599 catttagttgtactccaaaaatctactttcatattccta 637
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 803 catttagttgtactccaaaaatctactttcatattccta 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1039
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1029
Effective search space:   645183
Effective search space used:   645183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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