Query= MSMg01no536_n10.b1 MSMg01no536_n10.b1 CHROMAT_FILE:
MSMg01no536_n10.b1 PHD_FILE: MSMg01no536_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:03 2005
(582 letters)
>mm_chr6_78734833_78735814
Length = 982
Score = 1071 bits (554), Expect = 0.0
Identities = 572/578 (98%), Gaps = 2/578 (0%)
Strand = Plus / Plus
Query: 5 gaattccttcaatgtctgttcacccaggatgtactcaaattcattctctctttcttcagc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccttcaaggtctgttcacccaggatgtactcaaattcattctctctttcttcagc 266
Query: 65 aaaaaataaaataaataaaaaaagaaaatcaaaccaaaaaaaatatcaacacaacaaaaa 124
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 267 aaaaaataaaataaat-aaaaaagaaaatcaaacc-aaaaaaatatcaacacaacaaaaa 324
Query: 125 ataccaaagcaaatgaaaagcccacaaaaatctaaccaaataaaagcaaagttcattttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataccaaagcaaatgaaaagcccacaaaaatctaaccaaataaaagcaaagttcattttg 384
Query: 185 tgttactacattgattaaagtagcttctttatgtgctacaataaagattcagttcagttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttactacattgattaaagtagcttctttatgtgctacaataaagattcagttcagttt 444
Query: 245 gtttattctcctagcaatagaaagtggtttttaattattttatttaacacgttaaataat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtttattctcctagcaatagaaagtggtttttaattattttatttaacacgttaaataat 504
Query: 305 ccttaattctggttccacaccacacgttttcctttctgactctggggcctgatcatttct 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ccttaattctggttccacaccacacgttttcctttctgactctggagcctgatcatttct 564
Query: 365 ttttataacttttcctatctacttttatgtgaagatctttactctgtaccttatatttaa 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttatagcttttcctatctacttttatgtgaagatctttactctgtaccttatatttaa 624
Query: 425 atttatacagcttgagaatgtctctcccaaagtctgagtgagaagtgagtgaaggaaatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttatacagcttgagaatgtctctcccaaagtctgagtgagaagtgagtgaaggaaatt 684
Query: 485 actaccccttcttcccaccatctctatgtgtctaactctagtgtgtactttgttttaaga 544
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actaccccctcttcccaccatctctatgtgtctaactctagtgtgtactttgttttaaga 744
Query: 545 gataaaacgattccatagaaaggtctccttcttctctt 582
||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gataaaacgattccatagaaaggtctccttcttctctt 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_n10.g1 MSMg01no536_n10.g1 CHROMAT_FILE:
MSMg01no536_n10.g1 PHD_FILE: MSMg01no536_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:03 2005
(547 letters)
>mm_chr6_78879485_78880431
Length = 947
Score = 1006 bits (520), Expect = 0.0
Identities = 540/547 (98%)
Strand = Plus / Minus
Query: 1 ttataccctgttgctgtgatttacctacttcagcaatggatactgatatcttccggtgac 60
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttataccctgttgctgagatttatctacttcagcaatggatactgatatcttccggtgac 688
Query: 61 atcagaacttagcttcattgacttctaatatcaaagaccattgactctcaaggaaactta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 atcagaacttagcttcattgacttctaatatcaaagaccattgactctcaaggaaactta 628
Query: 121 aaggtctttggttccagatctggattgttgaagcacccaactttgtggactaagcaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaggtctttggttccagatctggattgttgaagcacccaactttgtggactaagcaattg 568
Query: 181 tcaggttctccaaacctcctccactgtaacaacaatggtaatgttggcttaaccagacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcaggttctccaaacctcctccactgtaacaacaatggtaatgttggcttaaccagacaa 508
Query: 241 tgtaggctcacacattcccttcttcttcatcttaaagactgaagtttctcagaaataaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 507 tgtaggctcacacattcccttcttcttcatcttaaagactgaagtttctcaaaaataaat 448
Query: 301 ggtgtctatgggagagtacacaatgccatttatttcatatactttaattttacaaatctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggtgtctatgggagagtacacaatgccatttatttcatatactttaattttacaaatctt 388
Query: 361 ctagagaacatgaaatatttgagtttatttattgttatcagcagaagtagaactaagagc 420
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctagggaacatgaaatatttgaatttatttattgttatcagcagaagtagaactaagagc 328
Query: 421 tgattgcaacttttttgtagatcatttctttactggtgtgcttttgacacagtgctcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgattgcaacttttttgtagatcatttctttactggtgtgcttttgacacagtgctcaaa 268
Query: 481 gatattgttacagtacttttatttttaatccccaaatatatatttattttcttatgnctt 540
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 267 gatattgttacagtacttttatttttaatccccaaatatttatttattttcttatgtctt 208
Query: 541 ttttgtt 547
|||||||
Sbjct: 207 ttttgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
