CTTTCGTTCAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTAGAGTTTTCTTGTAGAATATAACGTTAGAATTTCT
TAAAATGCTCATAAACATGTTTAATGTGCATGTTGCCAGTAAACTAGAAG
CTGTTGACAATGTTTCATTATCCTAATATTCAGAAGTCAGTTGTTATATG
CCCCAGTAATTCAACATGGTTAAATAAGAAAAAAAAATCCTAGAAACTAC
AATATTCACATAAAGAGAAAGGACTGATCATTTATATTATCTTTTACAAT
ATAGAATCAGAAGTGCCTGTGTGTATGGTACATCAAAAATTGAAGCAAGG
AATAGGACCACTATTTGGAAAGTAGAAAATGTCTGGTTTTGAAGGACAGA
ATAATTACACAAACAAAAACCAAGCAAACAACAACAACAAAACCCTCTTC
TTATTAGTTTAGCCTAAGACATGCAAGTGAATTTTGTAGGAGTGGCCCCA
AATCAAAGTGGACAGCCTGAAACTGCAAAGAGGGGGGGTGATTTGTAGAT
GATGAATATGTATATTTAGGGCTAATCTATAGAAGGCTAATAGGAAATGA
ATCTAGCATTTATGAGATTATTTAGGGCTTGATCACTAATTTGGTAAACA
CAGGAGAGTGAAAAGTGCTTTTAATAGAATATTCTCTACTAGTATTTAAA
TTCACCATTAAATATATATTAACAAACTGCTGACAGTTGAAACTTTATGG
AGGCATATCTGACTCTTCCCACCATTATTG

NNNNNCCAATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGG
AGCAGGAGTACCAGTGAGTACAGCTTTACAAGGTAAGTCTGGTCTTGAAC
TTTCTAAGGAAAGTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATAGCT
TTACAAGGTATGTTTGGCCTTGAACTCTTTCTAGTGTTAGGAGCCCTTTT
GTTCTTTTTCACATGTTATCAAGTGATTAAGATAGGGCTGAAAATTCTAG
ATGAAATTCAGGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGA
GCAAAGAGGAAATATGGTGCACAGAATAAGTATACAGGCCTTTCCAAGGG
TCTTGAACCCAAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGA
TTAGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATCAATTAGCGGAG
GTCTCTAGGAGATACTCGTCACTAGATGAGCTCAGGAAGCCAGCTCTTAG
TAGCTCTGAAGCAGATGAAGAATTCTCCTCTGAAGAAACAGACTGGGAGG
AAGAAGCAGCTCATTACCAGCCAGATAAAGTGCTAGTTAATCGGTCAAGA
AAAAAGCCAAAAGCGGCTGGCGAAAGCCAGCATGCTGTTCAGCCTCCGGG
CAGTCGGCTTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGC
ATCAGCCCTGCGCAGAGAGACATGCGCAGAA

Query= MSMg01no536_o04.b1 MSMg01no536_o04.b1 CHROMAT_FILE:
MSMg01no536_o04.b1 PHD_FILE: MSMg01no536_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:07 2005
         (571 letters)



>mm_chr6_20754182_20755151
          Length = 970

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%), Gaps = 1/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctagagttttcttgtagaatataacgttagaatttcttaaaatgctcataaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gaattcctagagttttcttgtagaatataacgttagaatttcttaaaatgctcataaaca 711

                                                                       
Query: 65  tgtttaatgtgcatgttgccagtaaactagaagctgttgacaatgtttcattatcctaat 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cgtttaatgtgcatgttgccagtaaactagaagctgttgacaatgtttcattatcctaat 651

                                                                       
Query: 125 attcagaagtcagttgttatatgccccagtaattcaacatggttaaataagaaaaaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 attcagaagtcagttgttatatgccccagtaattcaacatggttaaataagaaaaaaaaa 591

                                                                       
Query: 185 tcctagaaactacaatattcacataaagagaaaggactgatcatttatattatcttttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcctagaaactacaatattcacataaagagaaaggactgatcatttatattatcttttac 531

                                                                       
Query: 245 aatatagaatcagaagtgcctgtgtgtatggtacatcaaaaattgaagcaaggaatagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aatatagaatcagaagtgcctgtgtgtatggtacatcaaaaattgaagcaaggaatagga 471

                                                                       
Query: 305 ccactatttggaaagtagaaaatgtctggttttgaaggacagaataattacacaaacaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccactatttggaaagtagaaaatgtctggttttgaaggacagaataattacacaaacaaa 411

                                                                       
Query: 365 aaccaagcaaacaacaacaacaaaaccctcttcttattagtttagcctaagacatgcaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaccaagcaaacaacaacaacaaaaccctcttcttattagtttagcctaagacatgcaag 351

                                                                       
Query: 425 tgaattttgtaggagtggccccaaatcaaagtggacagcctgaaactgcaaagagggggg 484
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 350 tgaatgttgtaggagtggccccaaatcaaagtggacagcctgaaactgcaaaga-ggggg 292

                                                                       
Query: 485 gtgatttgtagatgatgaatatgtatatttagggctaatctatagaaggctaataggaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtgatttgtagatgatgaatatgtatatttagggctaatctatagaaggctaataggaaa 232

                                      
Query: 545 tgaatctagcatttatgagattattta 571
           |||||||||||||||||||||||||||
Sbjct: 231 tgaatctagcatttatgagattattta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space:   538560
Effective search space used:   538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)