Query= MSMg01no536_o23.b1 MSMg01no536_o23.b1 CHROMAT_FILE:
MSMg01no536_o23.b1 PHD_FILE: MSMg01no536_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:11 2005
(555 letters)
>mm_chr6_45291838_45292793
Length = 956
Score = 1036 bits (536), Expect = 0.0
Identities = 548/552 (99%), Gaps = 1/552 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtggtgttt-tcaatcattatttttattaccagtgcatgctgtcatgaaagat 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattcagtggtgtttataaatcattatttttattaccagtgcatgctgtcatgaaagat 697
Query: 64 ggctatgaaagcaacccatttaaatcatatatcacatataatctatatgaccatctagtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ggctatgaaagcaacccatttaaatcatatatcacatataatctatatgaccatctagtt 637
Query: 124 cccagatatacaaaagcacaaaagaggatttaaataattaaatagaaaaaaaagtaagct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 636 cccagatatacaaaagcacaaaagaggatttaaataattaaatagaaaaaaaagtaaact 577
Query: 184 taagattgtttcttaaaataagaaaacaggaattgcagttttatttttatatcaaggaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 taagattgtttcttaaaataagaaaacaggaattgcagttttatttttatatcaaggaag 517
Query: 244 cctgttgactctatagcaatatataagccactaaagtaatttcagaagctttttatctta 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 516 cctgttgactctatagcaatatataagccactaaagtaatttcaaaagctttttatctta 457
Query: 304 gaaaagaatggtaacataatcttggggcataaatgggaagagaagggtttcaaaatatat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaaaagaatggtaacataatcttggggcataaatgggaagagaagggtttcaaaatatat 397
Query: 364 tatcataaatcctgaactagaagggaaacaagatactctccaatgtgctaaattataatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tatcataaatcctgaactagaagggaaacaagatactctccaatgtgctaaattataatt 337
Query: 424 ccagtagagaaagtgtgtgagcaatgagaaacccagctacctaaagatttcagtattaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccagtagagaaagtgtgtgagcaatgagaaacccagctacctaaagatttcagtattaaa 277
Query: 484 ttttactttaccttttctttaatttttgagattattttataattgcattatgtgttactt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttttactttaccttttctttaatttttgagattattttataattgcattatgtgttactt 217
Query: 544 ccatttcctcct 555
||||||||||||
Sbjct: 216 ccatttcctcct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 956
Length adjustment: 10
Effective length of query: 545
Effective length of database: 946
Effective search space: 515570
Effective search space used: 515570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_o23.g1 MSMg01no536_o23.g1 CHROMAT_FILE:
MSMg01no536_o23.g1 PHD_FILE: MSMg01no536_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:11 2005
(545 letters)
>mm_chr6_45125812_45126758
Length = 947
Score = 963 bits (498), Expect = 0.0
Identities = 536/550 (97%), Gaps = 5/550 (0%)
Strand = Plus / Plus
Query: 1 ctctaattacaaatataagtcataaatctatttgccaattaacaatgaattggaaggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ctctaattacaaatataagtcataaatctatttgccaattaacaatgaattggaaggcct 257
Query: 61 tatactatgaatattaaattaatgaatatattgtccttttgtcattttcatattaacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tatactatgaatattaaattaatgaatatattgtccttttgtcattttcatattaacata 317
Query: 121 ggatagagaaaaagaagacagtagttttaattaattattaaatttgatgaattattttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggatagagaaaaagaagacagtagttttaattaattattaaatttgatgaattattttac 377
Query: 181 tgtttaataattttagaattatcataataattaacattattataaca---ttttaatgat 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 378 tgtttaataattttagaattatcataataattaacattattataacactattttaatgat 437
Query: 238 aatcaataatataatgctttaattaagaatgcaaaaactgaaatcagtaacttgaagagt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aatcaataatataatgctttaattaagaatgcaaaaactgaaatcagtaacttgaagagt 497
Query: 298 tttaatttaaggaagatttttaacaacacagcaagtgtatctttacaaaattaggggttt 357
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 498 tttaacttaaggaagatttttaacaacacagcaagtgaatctttacaaaattaggggttt 557
Query: 358 aa-ttgaacatggttagaatatgaaaaaa-tatgctagatagaagtatctttctgtattt 415
|| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 558 aaattgaacatggctagaatatgaaaaaaatgtgctagatagaagtatctttctgtattt 617
Query: 416 agctatttacacatatacttggatttaaaatattttctttctctgtaatccagcaaaata 475
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cgctatttacacatatacttgaatttaaaatattttctttctctgtaatccagcaaaata 677
Query: 476 atatgttaggaaattaggagtttcaggagtgcccattgcctttaaaacatagcaatggta 535
||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 678 atatgttaggaaattaggaatttaaggagtgtccattgcctttaaaacatagcaatggta 737
Query: 536 taagggaaga 545
||||||||||
Sbjct: 738 taagggaaga 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 947
Length adjustment: 10
Effective length of query: 535
Effective length of database: 937
Effective search space: 501295
Effective search space used: 501295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
