BAC Information

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BAC

Clone NameMSMg01-536P17
Chromosome6 (Build37)
Map Location 125,673,063 - 125,673,593
singlet/doubletsinglet
Overlap geneTmem16b
Upstream genePtpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf
Downstream geneNtf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536P17.T7 (MSMg01no536_p17.b1)MSMg01-536P17.TJ (MSMg01no536_p17.g1)
ACCAG604062AG604063
length788811
length of high quality
(start - end)
547 (44 - 590)531 (78 - 608)
definitionCHROMAT_FILE: MSMg01no536_p17.b1 PHD_FILE: MSMg01no536_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:14 2005CHROMAT_FILE: MSMg01no536_p17.g1 PHD_FILE: MSMg01no536_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCTCCTGACTGTCCGGTTTGGTTACACCCCCCCCCCCCAGAGAGGGAA
TCACCTATGGCTATTTGGATAAACTAACATAGACTCAAATATCTATGATT
ATAAGCACAAAGAAAGGCTACTATTCAACTCACTAGGCTCAACAACATTG
CATGGGTGAGAGCAGAAAGAATGTAAGAGCCAGAAGACAGGAAGAGGGTT
GTAAGATGCCATCTTCCAAGTAGGAAGTGAACACATGACAGCAGTGTTCA
TTGGTGCTGGGCCTGAATGAACTGGGTCTGCCCAATAATCAGCTATGGAT
GGGGGTGGTTCTCATGGGCATTAGCACTTACTGCTGAATTATGGCAACTA
AAGATCCTGAGAGACAGGGAGGCATAGTGTCCATGGGTGTAAGTAACCAC
TGATGTCCCTCCAAGCTCTAAGAGGTAGTTTCAAACCTAGGGTCACACTG
ATGGTCCTTCTAAACTCTGTAGGACACAAAACAAGACATGAATATAGTAA
AGAGATTTGTATGGAGTGAGAGGGATAATGGGGATAACCCAAAATGCATT
ATAAACATGTATGAAATCTCCAAGAACAAATTTATTAATAAAAAATACCA
TTTTACTCATAGCCACATGAAAATGACGTTGAACCCTGTTCAGAAAGTGT
CAGTCCCCAACTTCATTGATAGGGATGAACTTCCTGAAGGAGCCACTAGG
AAATGGGTGGACCCTCCAAAGTATGAGGATCCTTTCTT
NCCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAATGACAGAAAGTGACATG
GAAATGCAAGCCAAATAAACCCTTTCCTGCCCAAGTTGCCTTTGGTCATG
ATGTTTAATCACAGACTAGACTCTATCTTTAGTCCTCTGCCCAGAGCTTT
AACCTAACCAGAAGCTCAACTGAAATTAGAGGGTTTGTGAATCTGTTAAG
ATTCAGGGGATGGACTTTGTGGCTTTGGGTTCTTAGGGAACCTTGGGTTC
ATTGTGATATCTACAGAATGTGAACCCAGTTTAGGGGGCATTGTTGGCTT
GGGTGGGGCTTCATCTGCTGCTTTCCACTGTATAATGGGGTTGTTAGACC
CTGTAGGGATTGGAGTCTGGGCCTGGGCTAGGTGTTCATGGTATTCTGTC
TGCCACACTGAGTTTCTGTTTAGGAACTGATGAGGTCATGTTCCTGAGTC
TCAGTGCTCTTCCAGCCTGGGGTCTGGCACCTAACTCACCCACAGCTATG
GGAGGCCTGGTTTTCCTTGGGGAGGGCTGATGCTTTTTGCAGAATTTTGG
GACTAGCCAATCANGAGGGAAGGAATGTGATAGACCCGAGCTGCTGTGTT
CTCACCTCTGTCAGGTGCAAACACAGGGAACCCCTAAGGGTTTCAGGGTA
GAAGCCCTGGGGCCCCTCGGAGTTTGTATGGGTCTGAAGTTGGTTTTCTT
GTGTACACCACCCATGTGTGGAAACAGTGTGTGTGGCAGTGCTATTCTCA
GAAGGATCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_p17.g1 MSMg01no536_p17.g1 CHROMAT_FILE:
MSMg01no536_p17.g1 PHD_FILE: MSMg01no536_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:14 2005
         (531 letters)



>mm_chr6_125672863_125673793
          Length = 931

 Score = 1027 bits (531), Expect = 0.0
 Identities = 531/531 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttaatgacagaaagtgacatggaaatgcaagccaaataaaccctttcctgcccaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttaatgacagaaagtgacatggaaatgcaagccaaataaaccctttcctgcccaagtt 260

                                                                       
Query: 61  gcctttggtcatgatgtttaatcacagactagactctatctttagtcctctgcccagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctttggtcatgatgtttaatcacagactagactctatctttagtcctctgcccagagc 320

                                                                       
Query: 121 tttaacctaaccagaagctcaactgaaattagagggtttgtgaatctgttaagattcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaacctaaccagaagctcaactgaaattagagggtttgtgaatctgttaagattcagg 380

                                                                       
Query: 181 ggatggactttgtggctttgggttcttagggaaccttgggttcattgtgatatctacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatggactttgtggctttgggttcttagggaaccttgggttcattgtgatatctacaga 440

                                                                       
Query: 241 atgtgaacccagtttagggggcattgttggcttgggtggggcttcatctgctgctttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgaacccagtttagggggcattgttggcttgggtggggcttcatctgctgctttcca 500

                                                                       
Query: 301 ctgtataatggggttgttagaccctgtagggattggagtctgggcctgggctaggtgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtataatggggttgttagaccctgtagggattggagtctgggcctgggctaggtgttc 560

                                                                       
Query: 361 atggtattctgtctgccacactgagtttctgtttaggaactgatgaggtcatgttcctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggtattctgtctgccacactgagtttctgtttaggaactgatgaggtcatgttcctga 620

                                                                       
Query: 421 gtctcagtgctcttccagcctggggtctggcacctaactcacccacagctatgggaggcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctcagtgctcttccagcctggggtctggcacctaactcacccacagctatgggaggcc 680

                                                              
Query: 481 tggttttccttggggagggctgatgctttttgcagaattttgggactagcc 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggttttccttggggagggctgatgctttttgcagaattttgggactagcc 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)