GGGGTCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATTAACAATTTGCAAACCAAACTTAAGGCAATATATATG
TTTCTGAAAAAATCATACTATACTGATTTTTCTTGGGCTAACATAAACAC
AGAGGGCTGAATTTTGGGTTCATATCAAGAACTAGAATGAAGGAAGTGTT
ATTTAATACCATAGAGTGGGTAAAAACTGATCAGGAGCTGTATGGGGGAA
ATTTCTTTAGCCAAATAGTCATACCTCTGTTTTGAGTAACTCCCATAGAA
ATCATATTCCAAATTATTGTATACAGCTACTTGTACACACTCATATTTAC
AGTTATCATTTAGCAATTCAGTTAACACATATTAAAGACCTATATTGGGT
GTTGCCTTTGTCATTTAGAATGTACAAAGAAAAAAACATATAGGAAATGG
TGGCAACATGGCTTAGCTTGTAAATGCTTGTACTGATCATTGTGAGATCC
CAAGTTTGGTTTCTAGCACTCACATGGGAGTGGCTAAGAACTGCCTATAA
CTGCAGCTCCAGGGGAATCAGATACCTCTGGTTTCTGCAGGCATATGCCC
TCATGTGCATATACCCACACAGAGATGCACATAGGTACTCATAATTAAGT
GTGAAATAAATCTCTGAAAAGATAAACAGAACCCACAAATGCTTATCAAA
TTGCAGAGTAGAAGCCACAAAATACAGCCAAAAAACTGAAACTAGGAGAC
CTCC

NGGACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATATGGAGAAAGA
GGAACACTCCTCCATTGCTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACNNTATGTTCATAGNCAANCCCCTTTTTAAA
TTTTTTTNNNNNNNNNAAAANANNAAAAAAANNNNNNNNCCCCCCTCCCT
TTTCTAAATATAAAAAAAATTCTTTTTTCCTTTCCCCCCTTCTTCTTTTT
CTCTCCTTTTTTCTATNNTCATTTTTTTTCTNTTTANTTATCCACACAAT
AAATATCACCTTCATCTTCTCTCCTCCTCTCTTCTTNTTTTTCCCTTCTT
CTACTCTTAANCCAACATCATTATTTCAACATATTTTTCTTCATAACCAA
TTAAATTTTTTTTTATTAATTATTTCTACACTTCTTTTTTTTTTTTTCAC
N

Query= MSMg01no537_a05.b1 MSMg01no537_a05.b1 CHROMAT_FILE:
MSMg01no537_a05.b1 PHD_FILE: MSMg01no537_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:17 2005
         (602 letters)



>mm_chr6_76933479_76934480
          Length = 1002

 Score = 1065 bits (551), Expect = 0.0
 Identities = 587/599 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaattaacaatttgcaaaccaaacttaaggcaatatatatgtttctgaaaaaat 63
           |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct: 600 ggaattcaattaacaattagaaaaccaaaattaaggcaatatatatgtttctgaaaaaat 541

                                                                       
Query: 64  catactatactgatttttcttgggctaacataaacacagagggctgaattttgggttcat 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 catactatcctgatttttcttgggctaacataaacacagagggctgaattttgggttcat 481

                                                                       
Query: 124 atcaagaactagaatgaaggaagtgttatttaataccatagagtgggtaaaaactgatca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atcaagaactagaatgaaggaagtgttatttaataccatagagtgggtaaaaactgatca 421

                                                                       
Query: 184 ggagctgtatgggggaaatttctttagccaaatagtcatacctctgttttgagtaactcc 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaagctgtatgggggaaatttctttagccaaatagtcatacctctgttttgagtaactcc 361

                                                                       
Query: 244 catagaaatcatattccaaattattgtatacagctacttgtacacactcatatttacagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 catagaaatcatattccaaattattgtatacagctacttgtacacactcatatttacagt 301

                                                                       
Query: 304 tatcatttagcaattcagttaacacatattaaagacctatattgggtgttgcctttgtca 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tatcctttagcaattcagttaacacatattaaagacctatattgggtgttgcctttgtca 241

                                                                       
Query: 364 tttagaatgtacaaagaaaaaaacatataggaaatggtggcaacatggcttagcttgtaa 423
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 240 tttagaatgtacaaagaaaaaaacatataggaaatggtggcaacatggtttagcttgtaa 181

                                                                       
Query: 424 atgcttgtactgatcattgtgagatcccaagtttggtttctagcactcacatgggagtgg 483
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 180 atgcttgtactgatctttgtgagatcccaagtttggtttctagcactcacatggaagtgg 121

                                                                       
Query: 484 ctaagaactgcctataactgcagctccaggggaatcagatacctctggtttctgcaggca 543
           ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 120 ctaagaattgcctgtaactgcagctccaggggaatcagatatctctggtttctgcaggca 61

                                                                      
Query: 544 tatgccctcatgtgcatatacccacacagagatgcacataggtactcataattaagtgt 602
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  tatgccctcatgtgcatatacccacacagagatgcacataggtactcataattaagtgt 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)